RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ORC4O43929 436 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 NOVP48745 357 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 RBL2Q08999 1139 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 GPNMBQ14956 572 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 DGKDQ16760 1214 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 EP400NLQ6ZTU2 488 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 DHX38Q92620 1227 aaKnown RBP20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 TMEM47Q9BQJ4 181 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 ALG1Q9BT22 464 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 GTF2IRD1Q9UHL9 959 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 TTC41PQ6P2S7 1318 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 WDR19Q8NEZ3 1342 aa20.93■□□□□ 0.94
TSPAN3-208ENST00000560514 GRXCR2A6NFK2 248 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 DCXO43602 365 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 AMHP03971 560 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 PTK7Q13308 1070 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 LY6KQ17RY6 165 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 USH1GQ495M9 461 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 CTAGE1Q96RT6 745 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 HDAC6Q9UBN7 1215 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 ANAPC4Q9UJX5 808 aa20.92■□□□□ 0.94
TSPAN3-208ENST00000560514 PDHBP11177 359 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 TIGD5Q53EQ6 642 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 CCDC62Q6P9F0 684 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 MYOCDQ8IZQ8 938 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 KAT2BQ92831 832 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 MRPL38Q96DV4 380 aaKnown RBP20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 C17orf80Q9BSJ5 609 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 KCNH6Q9H252 994 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 DCTPP1Q9H773 170 aa20.91■□□□□ 0.94
TSPAN3-208ENST00000560514 EMSYQ7Z589 1322 aa20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 H3BQ06 376 aaPredicted RBP20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 PSEN2P49810 448 aa20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 ARHGAP1Q07960 439 aa20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 STXBP2Q15833 593 aa20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 DHX37Q8IY37 1157 aaKnown RBP20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 RGS22Q8NE09 1264 aa20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 NSUN6Q8TEA1 469 aaKnown RBP20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 SAMD11Q96NU1 681 aa20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 KIAA1217Q5T5P2 1943 aa20.9■□□□□ 0.94
TSPAN3-208ENST00000560514 LGR5O75473 907 aa20.89■□□□□ 0.93
TSPAN3-208ENST00000560514 ZNF543Q08ER8 600 aa20.89■□□□□ 0.93
TSPAN3-208ENST00000560514 MFSD10Q14728 455 aa20.89■□□□□ 0.93
TSPAN3-208ENST00000560514 KIAA0753Q2KHM9 967 aa20.89■□□□□ 0.93
TSPAN3-208ENST00000560514 ZNF618Q5T7W0 954 aa20.89■□□□□ 0.93
TSPAN3-208ENST00000560514 NEK9Q8TD19 979 aa20.89■□□□□ 0.93
TSPAN3-208ENST00000560514 TCP11L1Q9NUJ3 509 aa20.89■□□□□ 0.93
TSPAN3-208ENST00000560514 NHLH1Q02575 133 aa20.88■□□□□ 0.93
TSPAN3-208ENST00000560514 TCTN1Q2MV58 587 aa20.88■□□□□ 0.93
TSPAN3-208ENST00000560514 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.88■□□□□ 0.934e-8■■■□□ 17.1
TSPAN3-208ENST00000560514 BANK1Q8NDB2 785 aa20.88■□□□□ 0.93
TSPAN3-208ENST00000560514 IWS1Q96ST2 819 aa20.88■□□□□ 0.93
TSPAN3-208ENST00000560514 UPF3BQ9BZI7 483 aaKnown RBP20.88■□□□□ 0.93
TSPAN3-208ENST00000560514 MICAL3Q7RTP6 2002 aa20.88■□□□□ 0.93
TSPAN3-208ENST00000560514 MYH7BA7E2Y1 1941 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 LAMC2Q13753 1193 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 EPC2Q52LR7 807 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 GPATCH4Q5T3I0 446 aaKnown RBP20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 MCF2L2Q86YR7 1114 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 PI4K2BQ8TCG2 481 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 FBXL18Q96ME1 805 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 TTC14Q96N46 770 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 YME1L1Q96TA2 773 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 RMDN3Q96TC7 470 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 MAF1Q9H063 256 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 PRKAG3Q9UGI9 489 aa20.87■□□□□ 0.93
TSPAN3-208ENST00000560514 ABCB11O95342 1321 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 FOXP2O15409 715 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 FGRP09769 529 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 ZNF286BP0CG31 522 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 GPM6BQ13491 265 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 VPS53Q5VIR6 699 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 ARHGEF16Q5VV41 709 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 PABPC5Q96DU9 382 aaKnown RBP20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 TAAR1Q96RJ0 339 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 MRVI1Q9Y6F6 885 aa20.86■□□□□ 0.93
TSPAN3-208ENST00000560514 RSPH10B2B2RC85 870 aa20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 F2P00734 622 aa20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 RSPH10BP0C881 870 aa20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 THPOP40225 353 aa20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 ALX1Q15699 326 aa20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 DBF4BQ8NFT6 615 aa20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 PPTC7Q8NI37 304 aa20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 SYTL5Q8TDW5 730 aaPredicted RBP20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 EMID1Q96A84 441 aaPredicted RBP20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 NSUN3Q9H649 340 aaKnown RBP20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 DDX41Q9UJV9 622 aaKnown RBP20.85■□□□□ 0.93
TSPAN3-208ENST00000560514 POTEB3A0JP26 581 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 H3BNC9 293 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 EIF3JO75822 258 aaKnown RBP20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 GOLGA8HP0CJ92 632 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 HTRA4P83105 476 aaPredicted RBP20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 CDC37Q16543 378 aaPredicted RBP20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 TRIM71Q2Q1W2 868 aaKnown RBP20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 TCEAL5Q5H9L2 206 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 POTEBQ6S5H4 581 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 SP7Q8TDD2 431 aaPredicted RBP20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 MFSD14AQ96MC6 490 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 CLDND1Q9NY35 253 aa20.84■□□□□ 0.93
TSPAN3-208ENST00000560514 RCAN3Q9UKA8 241 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms