RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 LARP4BQ92615 738 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 CNOT6LQ96LI5 555 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 NAPGQ99747 312 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 TUBGCP2Q9BSJ2 902 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 MRIQ9BWK5 157 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 DHX36Q9H2U1 1008 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 USP40Q9NVE5 1235 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 FAM53CQ9NYF3 392 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 BIN2Q9UBW5 565 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 CDC23Q9UJX2 597 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 COL11A2P13942 1736 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 BRWD3Q6RI45 1802 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 A0A1W2PQJ5 194 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 RBM47A0AV96 593 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 TRIM49BA6NDI0 452 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 PES1O00541 588 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 RIMBP2O15034 1052 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 ZBTB5O15062 677 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 MTIF2P46199 727 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 ERVK-24P63145 666 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 HDLBPQ00341 1268 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 LRRC63Q05C16 580 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 DMTNQ08495 405 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 WHAMMP3Q1A5X7 153 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 CCDC96Q2M329 555 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 ZNF569Q5MCW4 686 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 RSRC2Q7L4I2 434 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 PODNQ7Z5L7 613 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 SRGAP1Q7Z6B7 1085 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 IRF2BP1Q8IU81 584 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 CCDC170Q8IYT3 715 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 ZNF507Q8TCN5 953 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 MASTLQ96GX5 879 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 TSG101Q99816 390 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 UBA5Q9GZZ9 404 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 NT5C3AQ9H0P0 336 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 CPVLQ9H3G5 476 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 HAUS4Q9H6D7 363 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 LZTFL1Q9NQ48 299 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 MAPK8IP1Q9UQF2 711 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 ARFGEF1Q9Y6D6 1849 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 FANCGO15287 622 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 KIF20AO95235 890 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 NDUFA10O95299 355 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 CHRM1P11229 460 aaPredicted RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TRIM21P19474 475 aaKnown RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 SHMT1P34896 483 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TXKP42681 527 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TNNI2P48788 182 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 CLK2P49760 499 aaKnown RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 CHMP4BP1P59074 171 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 ZBED6P86452 979 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 CDK17Q00537 523 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 MEA1Q16626 185 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 KIF4BQ2VIQ3 1234 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TMEM119Q4V9L6 283 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TEX35Q5T0J7 233 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TEX2Q8IWB9 1127 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 ZSCAN29Q8IWY8 852 aaPredicted RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 ADGRF4Q8IZF3 695 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 GUF1Q8N442 669 aaKnown RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 SNX29Q8TEQ0 813 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 RAD54LQ92698 747 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 MTMR8Q96EF0 704 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 ZDHHC15Q96MV8 337 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 ERGIC2Q96RQ1 377 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 PLIN2Q99541 437 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 DUSP9Q99956 384 aaKnown RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 MMTAG2Q9BU76 263 aaKnown RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TRIM34Q9BYJ4 488 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 TSGA10Q9BZW7 698 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 JMJD4Q9H9V9 463 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 GPCPD1Q9NPB8 672 aa8.1□□□□□ -1.11
VPS13C-206ENST00000558338 DDX4Q9NQI0 724 aaKnown RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 EPN1Q9Y6I3 576 aaPredicted RBP8.1□□□□□ -1.11
VPS13C-206ENST00000558338 COL2A1P02458 1487 aaPredicted RBP8.09□□□□□ -1.11
VPS13C-206ENST00000558338 TTC26A0AVF1 554 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 MPHOSPH10O00566 681 aaKnown RBP8.09□□□□□ -1.11
VPS13C-206ENST00000558338 MARCH6O60337 910 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 CRKP46108 304 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 PMS1P54277 932 aaKnown RBP8.09□□□□□ -1.11
VPS13C-206ENST00000558338 TBC1D8BQ0IIM8 1120 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 GRB10Q13322 594 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 AP3B2Q13367 1082 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 BRD3Q15059 726 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 CENPPQ6IPU0 288 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 CDC42EP5Q6NZY7 148 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 MOXD1Q6UVY6 613 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 ARHGAP27Q6ZUM4 889 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 ZNF467Q7Z7K2 595 aaPredicted RBP8.09□□□□□ -1.11
VPS13C-206ENST00000558338 TXLNBQ8N3L3 684 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 CERS5Q8N5B7 392 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 LRRN4CLQ8ND94 238 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 ACRBPQ8NEB7 543 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 CCDC102AQ96A19 550 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 COA7Q96BR5 231 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 NOC4LQ9BVI4 516 aaKnown RBP8.09□□□□□ -1.11
VPS13C-206ENST00000558338 QTRT2Q9H974 415 aaKnown RBP8.09□□□□□ -1.11
VPS13C-206ENST00000558338 TMEM260Q9NX78 707 aa8.09□□□□□ -1.11
VPS13C-206ENST00000558338 NYAP2Q9P242 653 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms