RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 QSER1Q2KHR3 1735 aa9.3□□□□□ -0.92
SPG11-209ENST00000558253 COL2A1P02458 1487 aaPredicted RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 NRXN2Q9P2S2 1712 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 CYP3A7-CYP3A51PA0A087WV96 503 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 TBX3O15119 743 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 TEX33O43247 280 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 ENTPD3O75355 529 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 URI1O94763 535 aaPredicted RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 IPO7O95373 1038 aaKnown RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 GYPCP04921 128 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 AKR1B1P15121 316 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 CYP3A7P24462 503 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 CASP14P31944 242 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 SHMT1P34896 483 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 HSPA1LP34931 641 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 TECP42680 631 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 CRKP46108 304 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 CLK2P49760 499 aaKnown RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 ASIC1P78348 528 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 AP3B2Q13367 1082 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 HYIQ5T013 277 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 FKBP15Q5T1M5 1219 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 ZNF772Q68DY9 489 aaPredicted RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 CENPPQ6IPU0 288 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 APOBEC3HQ6NTF7 200 aaKnown RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 UNC13DQ70J99 1090 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 SLFN12Q8IYM2 578 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 GUF1Q8N442 669 aaKnown RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 CSGALNACT2Q8N6G5 542 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 GPR161Q8N6U8 529 aaKnown RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 GMCL1P1Q8NEA9 526 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 RASGRP4Q8TDF6 673 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 RABGGTAQ92696 567 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 TRIM47Q96LD4 638 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 GPR101Q96P66 508 aaPredicted RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 NUP88Q99567 741 aaPredicted RBP9.29□□□□□ -0.92
SPG11-209ENST00000558253 DNAJC7Q99615 494 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 PSTPIP2Q9H939 334 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 JMJD4Q9H9V9 463 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 VAT1LQ9HCJ6 419 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 ABHD10Q9NUJ1 306 aa9.29□□□□□ -0.92
SPG11-209ENST00000558253 H0YIN7 160 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 MARCH6O60337 910 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 GNA14O95837 355 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 H2AFXP16104 143 aaPredicted RBP9.28□□□□□ -0.92
SPG11-209ENST00000558253 KRT9P35527 623 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 ZBED6P86452 979 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 PDE4DQ08499 809 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 TMEM119Q4V9L6 283 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 ARHGAP29Q52LW3 1261 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 TATDN1Q6P1N9 297 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 TOGARAM2Q6ZUX3 1019 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 TMEM179Q6ZVK1 233 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.28□□□□□ -0.92
SPG11-209ENST00000558253 PACS2Q86VP3 889 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 ZSCAN29Q8IWY8 852 aaPredicted RBP9.28□□□□□ -0.92
SPG11-209ENST00000558253 SMYD4Q8IYR2 804 aaPredicted RBP9.28□□□□□ -0.92
SPG11-209ENST00000558253 ADGRF4Q8IZF3 695 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 ZNF507Q8TCN5 953 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 STAMQ92783 540 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 GMCL1Q96IK5 515 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 ERGIC2Q96RQ1 377 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 TSG101Q99816 390 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 TUBGCP2Q9BSJ2 902 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 NUCKS1Q9H1E3 243 aaKnown RBP9.28□□□□□ -0.92
SPG11-209ENST00000558253 VPS33BQ9H267 617 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 VPS16Q9H269 839 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 HCSTQ9UBK5 93 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 BIN2Q9UBW5 565 aaPredicted RBP9.28□□□□□ -0.92
SPG11-209ENST00000558253 GDAQ9Y2T3 454 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 MRFAP1Q9Y605 127 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 FOCADQ5VW36 1801 aa9.28□□□□□ -0.92
SPG11-209ENST00000558253 CTAGE9A4FU28 777 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 ADAMTS3O15072 1205 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 TADA3O75528 432 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 CASP1P29466 404 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 CYLC1P35663 651 aaPredicted RBP9.27□□□□□ -0.93
SPG11-209ENST00000558253 CCT6AP40227 531 aaKnown RBP9.27□□□□□ -0.93
SPG11-209ENST00000558253 TXKP42681 527 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 MMP14P50281 582 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 PICALMQ13492 652 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 MEA1Q16626 185 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 WHAMMP3Q1A5X7 153 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 SLC4A8Q2Y0W8 1093 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 CERKLQ49MI3 558 aaPredicted RBP9.27□□□□□ -0.93
SPG11-209ENST00000558253 HSP90AA4PQ58FG1 418 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 COL23A1Q86Y22 540 aaPredicted RBP9.27□□□□□ -0.93
SPG11-209ENST00000558253 IRF2BP1Q8IU81 584 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 CERS5Q8N5B7 392 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 ERMNQ8TAM6 284 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 TSC1Q92574 1164 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 LARP4BQ92615 738 aaKnown RBP9.27□□□□□ -0.93
SPG11-209ENST00000558253 RAD54LQ92698 747 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 GOLGA1Q92805 767 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 KIFC2Q96AC6 838 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 MBOAT7Q96N66 472 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 DUSP9Q99956 384 aaKnown RBP9.27□□□□□ -0.93
SPG11-209ENST00000558253 MMTAG2Q9BU76 263 aaKnown RBP9.27□□□□□ -0.93
SPG11-209ENST00000558253 TSGA10Q9BZW7 698 aa9.27□□□□□ -0.93
SPG11-209ENST00000558253 UBA5Q9GZZ9 404 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms