RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 PDCLQ13371 301 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 ASTE1Q2TB18 679 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 ARHGAP27Q6ZUM4 889 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 MTMR8Q96EF0 704 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 MMTAG2Q9BU76 263 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 LUC7LQ9NQ29 371 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 GDF3Q9NR23 364 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 STK17AQ9UEE5 414 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 MTMR7Q9Y216 660 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 SAMM50Q9Y512 469 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 BUB1O43683 1085 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 HOXA7P31268 230 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 HIBADHP31937 336 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 USP8P40818 1118 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 ORC2Q13416 577 aaPredicted RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 ERFEQ4G0M1 354 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 TDRD12Q587J7 1177 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 MCTP2Q6DN12 878 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 C3orf67Q6ZVT6 689 aa13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 CCDC43Q96MW1 224 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 NUCKS1Q9H1E3 243 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-211ENST00000557658 USP17L3A6NCW0 530 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 USP17L4A6NCW7 530 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 MYMKA6NI61 221 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 KIAA0754O94854 1291 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 HEXIM1O94992 359 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 SLC1A4P43007 532 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 KDM7AQ6ZMT4 941 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 USP17L1Q7RTZ2 530 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 IQCKQ8N0W5 287 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 KAT2BQ92831 832 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 MS4A14Q96JA4 679 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 TSG101Q99816 390 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 SMCO2A6NFE2 343 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 KLRF2D3W0D1 207 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 RBAK-RBAKDNI3L0D1 243 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 GLI1P08151 1106 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 KLRK1P26718 216 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 CARSP49589 748 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 SLC9C1Q4G0N8 1177 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 SOGA3Q5TF21 947 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 DZIP1Q86YF9 867 aaKnown RBP13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 GPIHBP1Q8IV16 184 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 ZNF444Q8N0Y2 327 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 MREGQ8N565 214 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 DYNLL2Q96FJ2 89 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 CDK5RAP3Q96JB5 506 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 TMEM47Q9BQJ4 181 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 SPZ1Q9BXG8 430 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 TANGO6Q9C0B7 1094 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 EPB41L5Q9HCM4 733 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 NFU1Q9UMS0 254 aa13.06□□□□□ -0.32
VIPAS39-211ENST00000557658 MYH14Q7Z406 1995 aaKnown RBP13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 A0A0G2JS52 829 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 GRID2IPA4D2P6 1211 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 ZEB2O60315 1214 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 KRT14P02533 472 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 ATP1A2P50993 1020 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 GUCY2DQ02846 1103 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 GRB10Q13322 594 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 SWT1Q5T5J6 900 aaKnown RBP13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 HGSNATQ68CP4 663 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 SPTY2D1Q68D10 685 aaPredicted RBP13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 KCTD16Q68DU8 428 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 MICALCLQ6ZW33 695 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 CERS3Q8IU89 383 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 CD302Q8IX05 232 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 SH2D3CQ8N5H7 860 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 IFT81Q8WYA0 676 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 LARP4BQ92615 738 aaKnown RBP13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 CELF1Q92879 486 aaKnown RBP13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 CEP89Q96ST8 783 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 RIC8AQ9NPQ8 531 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 BLOC1S4Q9NUP1 217 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 TFCP2L1Q9NZI6 479 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 STX8Q9UNK0 236 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 GOLGA8HP0CJ92 632 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 TXKP42681 527 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 ATP2B2Q01814 1243 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 LRRC55Q6ZSA7 311 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 DYMQ7RTS9 669 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 TBCKQ8TEA7 893 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 SYN2Q92777 582 aaPredicted RBP13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 LRRC27Q9C0I9 530 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 CEP72Q9P209 647 aa13.05□□□□□ -0.32
VIPAS39-211ENST00000557658 ROBO3Q96MS0 1386 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 LOC102724428A0A0B4J2F2 783 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 ZNF233A6NK53 670 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 SERPING1P05155 500 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 SIK1P57059 783 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 PSMD2Q13200 908 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 TMEM266Q2M3C6 531 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 EMC10Q5UCC4 262 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 SFMBT2Q5VUG0 894 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 FOXR2Q6PJQ5 311 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 PROM2Q8N271 834 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 OTUD6BQ8N6M0 293 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 WHAMMQ8TF30 809 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 PALMO75781 387 aa13.04□□□□□ -0.32
VIPAS39-211ENST00000557658 FAM153BP0C7A2 387 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms