RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CEP41Q9BYV8 373 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 CELF4Q9BZC1 486 aaKnown RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 ASCC2Q9H1I8 757 aaPredicted RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 PRDM5Q9NQX1 630 aaPredicted RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 B4GALT6Q9UBX8 382 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 KCNH3Q9ULD8 1083 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 NPFFR2Q9Y5X5 522 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 COMMD10Q9Y6G5 202 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 VSTM5A8MXK1 200 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 ULK1O75385 1050 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 SNUPNO95149 360 aaKnown RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 ZNF865P0CJ78 1059 aaPredicted RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 CCND1P24385 295 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 GRIK1P39086 918 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 DNM2P50570 870 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 MECP2P51608 486 aaKnown RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 KPNA1P52294 538 aaPredicted RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 OCRLQ01968 901 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 KCNAB2Q13303 367 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 MBTPS1Q14703 1052 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 BRD3Q15059 726 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 CLEC16AQ2KHT3 1053 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 SFRP5Q5T4F7 317 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 E4F1Q66K89 784 aaPredicted RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 CXorf57Q6NSI4 855 aaKnown RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 SEZ6L2Q6UXD5 910 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 Q6ZS46 218 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 KSR1Q8IVT5 923 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 TPH2Q8IWU9 490 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 DIO2Q92813 273 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 SLC39A13Q96H72 371 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 AHCYL2Q96HN2 611 aaKnown RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 FUBP3Q96I24 572 aaKnown RBP eCLIP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 DUSP23Q9BVJ7 150 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 HDAC8Q9BY41 377 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 C1GALT1Q9NS00 363 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 H2AFY2Q9P0M6 372 aaPredicted RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 PPARGC1AQ9UBK2 798 aaKnown RBP4.09□□□□□ -1.75
TRAV28-201ENST00000557548 USP21Q9UK80 565 aa4.09□□□□□ -1.75
TRAV28-201ENST00000557548 PTPDC1A2A3K4 754 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 CCDC66A2RUB6 948 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 DBX1A6NMT0 343 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 PRR33A8MZF0 331 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 K7ESF4 209 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 FZD9O00144 591 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 LDHAP00338 332 aaKnown RBP4.08□□□□□ -1.76
TRAV28-201ENST00000557548 SOD2P04179 222 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 FAM87AP0C7U9 286 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 PF4V1P10720 104 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 KIR3DL1P43629 444 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 KLF1Q13351 362 aaPredicted RBP4.08□□□□□ -1.76
TRAV28-201ENST00000557548 PCBP2Q15366 365 aaKnown RBP eCLIP4.08□□□□□ -1.76
TRAV28-201ENST00000557548 TESK1Q15569 626 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 DDB1Q16531 1140 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 KIZQ2M2Z5 673 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 INAVAQ3KP66 663 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 FAM47CQ5HY64 1035 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 RCSD1Q6JBY9 416 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 TSHZ1Q6ZSZ6 1077 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 OVCH1Q7RTY7 1134 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 DGKHQ86XP1 1220 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 CLRN3Q8NCR9 226 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 RCBTB1Q8NDN9 531 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 UTP4Q969X6 686 aaKnown RBP4.08□□□□□ -1.76
TRAV28-201ENST00000557548 TIFAQ96CG3 184 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 TCTN2Q96GX1 697 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 FAM46AQ96IP4 442 aaKnown RBP4.08□□□□□ -1.76
TRAV28-201ENST00000557548 COX4I2Q96KJ9 171 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 UBL7Q96S82 380 aaPredicted RBP4.08□□□□□ -1.76
TRAV28-201ENST00000557548 SLC12A9Q9BXP2 914 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 IPPKQ9H8X2 491 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 C14orf119Q9NWQ9 140 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 OBP2AQ9NY56 170 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 PCDHA2Q9Y5H9 948 aa4.08□□□□□ -1.76
TRAV28-201ENST00000557548 WASHC2AQ641Q2 1341 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 FAM95CA0A1B0GW59 222 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 KIAA1324LA8MWY0 1029 aaPredicted RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 CREB3O43889 395 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 KRT37O76014 449 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 GSTM1P09488 218 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 BMP3P12645 472 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 VAV1P15498 845 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 GRK2P25098 689 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 MAP4P27816 1152 aaKnown RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 BMP8BP34820 402 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 GRK3P35626 688 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 PDE6BP35913 854 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 BUD31P41223 144 aaPredicted RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 NOP2P46087 812 aaKnown RBP4.07□□□□□ -1.76
TRAV28-201ENST00000557548 SESN3P58005 492 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 ST5P78524 1137 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 TNK2Q07912 1038 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 NFKBIBQ15653 356 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 INF2Q27J81 1249 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 EEF1DP3Q658K8 133 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 CREB3L3Q68CJ9 461 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 MBLAC2Q68D91 279 aa4.07□□□□□ -1.76
TRAV28-201ENST00000557548 LILRA6Q6PI73 481 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms