RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SLC9C1Q4G0N8 1177 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 CACNA2D4Q7Z3S7 1137 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 SMCR8Q8TEV9 937 aaPredicted RBP18■□□□□ 0.47
SHMT2-231ENST00000557433 HDAC7Q8WUI4 952 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 RRP36Q96EU6 259 aaKnown RBP18■□□□□ 0.47
SHMT2-231ENST00000557433 TLR10Q9BXR5 811 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 FAM207AQ9NSI2 230 aaPredicted RBP18■□□□□ 0.47
SHMT2-231ENST00000557433 CEP72Q9P209 647 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 SMCO2A6NFE2 343 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 CES2O00748 559 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 BAG3O95817 575 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 GNA14O95837 355 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 SERPING1P05155 500 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 USP17L8P0C7I0 530 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 PRDX5P30044 214 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 GTF2A1P52655 376 aaPredicted RBP18■□□□□ 0.47
SHMT2-231ENST00000557433 PPP4CP60510 307 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 RPS8P62241 208 aaKnown RBP18■□□□□ 0.47
SHMT2-231ENST00000557433 KLHDC7AQ5VTJ3 777 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 WHAMMQ8TF30 809 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 LARP4BQ92615 738 aaKnown RBP18■□□□□ 0.47
SHMT2-231ENST00000557433 TMEM47Q9BQJ4 181 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 PAGR1Q9BTK6 254 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 SLC39A2Q9NP94 309 aa18■□□□□ 0.47
SHMT2-231ENST00000557433 SEC63Q9UGP8 760 aaKnown RBP18■□□□□ 0.47
SHMT2-231ENST00000557433 TECP42680 631 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 EZH2Q15910 746 aaKnown RBP17.99■□□□□ 0.47
SHMT2-231ENST00000557433 KDM7AQ6ZMT4 941 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 LRRC55Q6ZSA7 311 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 MICALCLQ6ZW33 695 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 WDR66Q8TBY9 1149 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 ZBTB9Q96C00 473 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 CDK5RAP3Q96JB5 506 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 NYXQ9GZU5 481 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 ROBO1Q9Y6N7 1651 aa17.99■□□□□ 0.47
SHMT2-231ENST00000557433 GRB10Q13322 594 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 ITPK1Q13572 414 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 CFAP58Q5T655 872 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 IQCKQ8N0W5 287 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 CELF1Q92879 486 aaKnown RBP17.98■□□□□ 0.47
SHMT2-231ENST00000557433 CEP63Q96MT8 703 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 MTMR9Q96QG7 549 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 BLOC1S4Q9NUP1 217 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 MYMKA6NI61 221 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 EPHB6O15197 1021 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 LDHCP07864 332 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 GUCY2CP25092 1073 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 EHHADHQ08426 723 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 REXO1Q8N1G1 1221 aaKnown RBP17.98■□□□□ 0.47
SHMT2-231ENST00000557433 MICALL1Q8N3F8 863 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 DRC1Q96MC2 740 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 PLEKHA4Q9H4M7 779 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 RBM12Q9NTZ6 932 aaKnown RBP17.98■□□□□ 0.47
SHMT2-231ENST00000557433 GGA2Q9UJY4 613 aa17.98■□□□□ 0.47
SHMT2-231ENST00000557433 BTNL10A8MVZ5 291 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 SLC26A4O43511 780 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 FKBP3Q00688 224 aaKnown RBP17.97■□□□□ 0.47
SHMT2-231ENST00000557433 NAB2Q15742 525 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 CALCRLQ16602 461 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 TTMPQ5BVD1 217 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 C10orf76Q5T2E6 689 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 SWT1Q5T5J6 900 aaKnown RBP17.97■□□□□ 0.47
SHMT2-231ENST00000557433 SFMBT2Q5VUG0 894 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 HGSNATQ68CP4 663 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 C3orf67Q6ZVT6 689 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 YTHDF3Q7Z739 585 aaKnown RBP17.97■□□□□ 0.47
SHMT2-231ENST00000557433 TSEN2Q8NCE0 465 aaKnown RBP17.97■□□□□ 0.47
SHMT2-231ENST00000557433 TBCKQ8TEA7 893 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 RAD54LQ92698 747 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 THRAP3Q9Y2W1 955 aaKnown RBP17.97■□□□□ 0.47
SHMT2-231ENST00000557433 ZNF831Q5JPB2 1677 aa17.97■□□□□ 0.47
SHMT2-231ENST00000557433 USP17L3A6NCW0 530 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 USP17L4A6NCW7 530 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 MATR3P43243 847 aaKnown RBP eCLIP17.96■□□□□ 0.47
SHMT2-231ENST00000557433 SLC7A5Q01650 507 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 USP17L1Q7RTZ2 530 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 ZIM3Q96PE6 472 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 CEP89Q96ST8 783 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 PCDHGC5Q9Y5F6 944 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 COL4A3BPQ9Y5P4 624 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 KAT6BQ8WYB5 2073 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 MYH14Q7Z406 1995 aaKnown RBP17.96■□□□□ 0.47
SHMT2-231ENST00000557433 WTIPA6NIX2 430 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-231ENST00000557433 HMGB1P1B2RPK0 211 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-231ENST00000557433 LDHBP07195 334 aaKnown RBP17.96■□□□□ 0.47
SHMT2-231ENST00000557433 INPP5BP32019 993 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 MARSP56192 900 aaKnown RBP17.96■□□□□ 0.47
SHMT2-231ENST00000557433 TNNC1P63316 161 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 RASSF7Q02833 373 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 KRT79Q5XKE5 535 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 MYOCDQ8IZQ8 938 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 MTMR8Q96EF0 704 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 EEF2KMTQ96G04 330 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 PNMA5Q96PV4 448 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 STX8Q9UNK0 236 aa17.96■□□□□ 0.47
SHMT2-231ENST00000557433 NDUFAB1O14561 156 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 KIAA0754O94854 1291 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 RASA1P20936 1047 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 TMEM119Q4V9L6 283 aa17.95■□□□□ 0.46
SHMT2-231ENST00000557433 TDRD12Q587J7 1177 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms