RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 EHMT1Q9H9B1 1298 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 ZSWIM6Q9HCJ5 1215 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 PRDM5Q9NQX1 630 aaPredicted RBP23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 PDLIM7Q9NR12 457 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 MRVI1Q9Y6F6 885 aa23.76■■□□□ 1.39
CCDC88C-210ENST00000555995 ARVCFO00192 962 aa23.75■■□□□ 1.39
CCDC88C-210ENST00000555995 PQBP1O60828 265 aaKnown RBP23.75■■□□□ 1.39
CCDC88C-210ENST00000555995 MAGEA10P43363 369 aaPredicted RBP23.75■■□□□ 1.39
CCDC88C-210ENST00000555995 ANAPC15P60006 121 aa23.75■■□□□ 1.39
CCDC88C-210ENST00000555995 CCDC62Q6P9F0 684 aa23.75■■□□□ 1.39
CCDC88C-210ENST00000555995 VSIG10LQ86VR7 867 aa23.75■■□□□ 1.39
CCDC88C-210ENST00000555995 PSTPIP2Q9H939 334 aa23.75■■□□□ 1.39
CCDC88C-210ENST00000555995 A6NJR5 290 aa23.74■■□□□ 1.39
CCDC88C-210ENST00000555995 TGFB3P10600 412 aa23.74■■□□□ 1.39
CCDC88C-210ENST00000555995 IRX5P78411 483 aaPredicted RBP23.74■■□□□ 1.39
CCDC88C-210ENST00000555995 CXCL17Q6UXB2 119 aa23.74■■□□□ 1.39
CCDC88C-210ENST00000555995 DNAH12Q6ZR08 3092 aa23.73■■□□□ 1.39
CCDC88C-210ENST00000555995 CDK7P50613 346 aa23.73■■□□□ 1.39
CCDC88C-210ENST00000555995 NAPAP54920 295 aa23.73■■□□□ 1.39
CCDC88C-210ENST00000555995 EVCP57679 992 aa23.73■■□□□ 1.39
CCDC88C-210ENST00000555995 EMID1Q96A84 441 aaPredicted RBP23.73■■□□□ 1.39
CCDC88C-210ENST00000555995 MTG1Q9BT17 334 aaPredicted RBP23.73■■□□□ 1.39
CCDC88C-210ENST00000555995 SPDYE3A6NKU9 549 aa23.72■■□□□ 1.39
CCDC88C-210ENST00000555995 MEIS2O14770 477 aa23.72■■□□□ 1.39
CCDC88C-210ENST00000555995 AKAP17AQ02040 695 aaKnown RBP23.72■■□□□ 1.39
CCDC88C-210ENST00000555995 FUT2Q10981 343 aa23.72■■□□□ 1.39
CCDC88C-210ENST00000555995 SLC43A3Q8NBI5 491 aa23.72■■□□□ 1.39
CCDC88C-210ENST00000555995 CCDC12Q8WUD4 166 aaPredicted RBP23.72■■□□□ 1.39
CCDC88C-210ENST00000555995 UBE2OQ9C0C9 1292 aaKnown RBP23.72■■□□□ 1.39
CCDC88C-210ENST00000555995 SCN10AQ9Y5Y9 1956 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 hCG_1642624A0A1W2PR95 340 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 KIAA0355O15063 1070 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 ARIH2O95376 493 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 MYL3P08590 195 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 CDC27P30260 824 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 PURAQ00577 322 aaKnown RBP23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 ITGA7Q13683 1181 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 LAMC2Q13753 1193 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 TMEM63BQ5T3F8 832 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 PCNX4Q63HM2 1172 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 WWC2Q6AWC2 1192 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 USP17L6PQ6QN14 398 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 GPKOWQ92917 476 aaPredicted RBP eCLIP23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 FAM217BQ9NTX9 383 aaPredicted RBP23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 TMEM39AQ9NV64 488 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 DDX41Q9UJV9 622 aaKnown RBP23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 V9GY48 417 aaPredicted RBP23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 MYH7BA7E2Y1 1941 aa23.71■■□□□ 1.39
CCDC88C-210ENST00000555995 ARHGAP1Q07960 439 aa23.7■■□□□ 1.38
CCDC88C-210ENST00000555995 LY6KQ17RY6 165 aa23.7■■□□□ 1.38
CCDC88C-210ENST00000555995 DHX37Q8IY37 1157 aaKnown RBP23.7■■□□□ 1.38
CCDC88C-210ENST00000555995 IL31RAQ8NI17 732 aa23.7■■□□□ 1.38
CCDC88C-210ENST00000555995 COPS5Q92905 334 aa23.7■■□□□ 1.38
CCDC88C-210ENST00000555995 INPP4AQ96PE3 977 aaPredicted RBP23.7■■□□□ 1.38
CCDC88C-210ENST00000555995 BARHL2Q9NY43 387 aa23.7■■□□□ 1.38
CCDC88C-210ENST00000555995 FOSP01100 380 aaPredicted RBP23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 RAG1P15918 1043 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 ADD1P35611 737 aaKnown RBP23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 ADCY7P51828 1080 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 MDM2Q00987 491 aaPredicted RBP23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 FAAP100Q0VG06 881 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 NLRX1Q86UT6 975 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 FAM126BQ8IXS8 530 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 PPTC7Q8NI37 304 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 ZNF274Q96GC6 653 aaPredicted RBP23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 CDHR1Q96JP9 859 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 RNF26Q9BY78 433 aaPredicted RBP23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 RIC8AQ9NPQ8 531 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 PDRG1Q9NUG6 133 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 TRIOBPQ9H2D6 2365 aa23.69■■□□□ 1.38
CCDC88C-210ENST00000555995 FIBPO43427 364 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 MMP3P08254 477 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 SCG2P13521 617 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 PTGS1P23219 599 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 PDIA3P30101 505 aaKnown RBP23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 ICAM3P32942 547 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 DGKDQ16760 1214 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 PFKFB3Q16875 520 aaPredicted RBP23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 MCTP2Q6DN12 878 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 CPLX2Q6PUV4 134 aaKnown RBP23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 TDHQ8IZJ6 230 aa23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 UPF3BQ9BZI7 483 aaKnown RBP23.68■■□□□ 1.38
CCDC88C-210ENST00000555995 TRIM43BA6NCK2 446 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 STXBP3O00186 592 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 PRPF3O43395 683 aaKnown RBP23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 RGS20O76081 388 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 SUPT20HL2P0C7V6 817 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 IFNAR1P17181 557 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 PTPN11Q06124 597 aaPredicted RBP23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 AP3B2Q13367 1082 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 TOB2Q14106 344 aaPredicted RBP23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 NEDD9Q14511 834 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 ANKRD1Q15327 319 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 TRIM22Q8IYM9 498 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 CCDC148Q8NFR7 591 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 AFG1LQ8WV93 481 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 TRIM43Q96BQ3 446 aaPredicted RBP23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 KATNAL1Q9BW62 490 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 TBX21Q9UL17 535 aa23.67■■□□□ 1.38
CCDC88C-210ENST00000555995 ESYT2A0FGR8 921 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms