RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 NTRK3Q16288 839 aa22.26■■□□□ 1.15
PTCH1-227ENST00000553256 NOL8Q76FK4 1167 aaKnown RBP22.26■■□□□ 1.15
PTCH1-227ENST00000553256 RUFY3Q7L099 469 aa22.26■■□□□ 1.15
PTCH1-227ENST00000553256 TBX21Q9UL17 535 aa22.26■■□□□ 1.15
PTCH1-227ENST00000553256 CABYRO75952 493 aa22.25■■□□□ 1.15
PTCH1-227ENST00000553256 CD4P01730 458 aa22.25■■□□□ 1.15
PTCH1-227ENST00000553256 PSMA5P28066 241 aa22.25■■□□□ 1.15
PTCH1-227ENST00000553256 WWC2Q6AWC2 1192 aa22.25■■□□□ 1.15
PTCH1-227ENST00000553256 SYNE3Q6ZMZ3 975 aa22.25■■□□□ 1.15
PTCH1-227ENST00000553256 FAM126BQ8IXS8 530 aa22.25■■□□□ 1.15
PTCH1-227ENST00000553256 EMID1Q96A84 441 aaPredicted RBP22.25■■□□□ 1.15
PTCH1-227ENST00000553256 SEC63Q9UGP8 760 aaKnown RBP22.25■■□□□ 1.15
PTCH1-227ENST00000553256 LAMA2P24043 3122 aaKnown RBP22.25■■□□□ 1.15
PTCH1-227ENST00000553256 SCN10AQ9Y5Y9 1956 aa22.25■■□□□ 1.15
PTCH1-227ENST00000553256 A0A0U1RQG5 324 aaPredicted RBP22.24■■□□□ 1.15
PTCH1-227ENST00000553256 GOLGA8AA7E2F4 631 aa22.24■■□□□ 1.15
PTCH1-227ENST00000553256 GOLGA8BA8MQT2 603 aa22.24■■□□□ 1.15
PTCH1-227ENST00000553256 LY6KQ17RY6 165 aa22.24■■□□□ 1.15
PTCH1-227ENST00000553256 SEPT14Q6ZU15 432 aa22.24■■□□□ 1.15
PTCH1-227ENST00000553256 OR6J1Q8NGC5 347 aa22.24■■□□□ 1.15
PTCH1-227ENST00000553256 GPKOWQ92917 476 aaPredicted RBP eCLIP22.24■■□□□ 1.15
PTCH1-227ENST00000553256 PQBP1O60828 265 aaKnown RBP22.23■■□□□ 1.15
PTCH1-227ENST00000553256 CLTBP09497 229 aa22.23■■□□□ 1.15
PTCH1-227ENST00000553256 HOXD8P13378 290 aaPredicted RBP22.23■■□□□ 1.15
PTCH1-227ENST00000553256 SP2Q02086 613 aa22.23■■□□□ 1.15
PTCH1-227ENST00000553256 SEMA3FQ13275 785 aa22.23■■□□□ 1.15
PTCH1-227ENST00000553256 FCHSD1Q86WN1 690 aa22.23■■□□□ 1.15
PTCH1-227ENST00000553256 INPP4AQ96PE3 977 aaPredicted RBP22.23■■□□□ 1.15
PTCH1-227ENST00000553256 V9GY48 417 aaPredicted RBP22.23■■□□□ 1.15
PTCH1-227ENST00000553256 STXBP3O00186 592 aa22.22■■□□□ 1.15
PTCH1-227ENST00000553256 SEC24BO95487 1268 aa22.22■■□□□ 1.15
PTCH1-227ENST00000553256 PDIA3P30101 505 aaKnown RBP22.22■■□□□ 1.15
PTCH1-227ENST00000553256 ICAM3P32942 547 aa22.22■■□□□ 1.15
PTCH1-227ENST00000553256 CPT1AP50416 773 aa22.22■■□□□ 1.15
PTCH1-227ENST00000553256 MDM2Q00987 491 aaPredicted RBP22.22■■□□□ 1.15
PTCH1-227ENST00000553256 PKN1Q16512 942 aa22.22■■□□□ 1.15
PTCH1-227ENST00000553256 PSTPIP2Q9H939 334 aa22.22■■□□□ 1.15
PTCH1-227ENST00000553256 ZEB2O60315 1214 aa22.21■■□□□ 1.15
PTCH1-227ENST00000553256 METAP2P50579 478 aaKnown RBP eCLIP22.21■■□□□ 1.15
PTCH1-227ENST00000553256 PSMC6P62333 389 aa22.21■■□□□ 1.15
PTCH1-227ENST00000553256 ITGA7Q13683 1181 aa22.21■■□□□ 1.15
PTCH1-227ENST00000553256 TEX2Q8IWB9 1127 aa22.21■■□□□ 1.15
PTCH1-227ENST00000553256 KAT2BQ92831 832 aa22.21■■□□□ 1.15
PTCH1-227ENST00000553256 ZFP91Q96JP5 570 aaPredicted RBP22.21■■□□□ 1.15
PTCH1-227ENST00000553256 SLC34A2O95436 690 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 GH1P01241 217 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 MYCLP12524 364 aaPredicted RBP22.2■■□□□ 1.14
PTCH1-227ENST00000553256 CCND2P30279 289 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 MYSM1Q5VVJ2 828 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 PCNX4Q63HM2 1172 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 PPP1R18Q6NYC8 613 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 AFG1LQ8WV93 481 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 SEZ6LQ9BYH1 1024 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 UPF3BQ9BZI7 483 aaKnown RBP22.2■■□□□ 1.14
PTCH1-227ENST00000553256 BCAS3Q9H6U6 928 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 POLR3EQ9NVU0 708 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 BARHL2Q9NY43 387 aa22.2■■□□□ 1.14
PTCH1-227ENST00000553256 SPATA31C2B4DYI2 1134 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 ADAMTS3O15072 1205 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 STAM2O75886 525 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 MMP3P08254 477 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 TGFB3P10600 412 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 UBA1P22314 1058 aaKnown RBP22.19■■□□□ 1.14
PTCH1-227ENST00000553256 CLK2P49760 499 aaKnown RBP22.19■■□□□ 1.14
PTCH1-227ENST00000553256 ANAPC15P60006 121 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 UBE2SQ16763 222 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 PFKFB3Q16875 520 aaPredicted RBP22.19■■□□□ 1.14
PTCH1-227ENST00000553256 XRRA1Q6P2D8 792 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 HEATR3Q7Z4Q2 680 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 BADQ92934 168 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 MTG1Q9BT17 334 aaPredicted RBP22.19■■□□□ 1.14
PTCH1-227ENST00000553256 ALDH8A1Q9H2A2 487 aaPredicted RBP22.19■■□□□ 1.14
PTCH1-227ENST00000553256 RIC8AQ9NPQ8 531 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 CYP46A1Q9Y6A2 500 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 MRVI1Q9Y6F6 885 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 MROH7Q68CQ1 1323 aa22.19■■□□□ 1.14
PTCH1-227ENST00000553256 DCDC2CA8MYV0 355 aa22.18■■□□□ 1.14
PTCH1-227ENST00000553256 hCG_1984214I3L0E3 225 aa22.18■■□□□ 1.14
PTCH1-227ENST00000553256 SOX1O00570 391 aaPredicted RBP22.18■■□□□ 1.14
PTCH1-227ENST00000553256 PRPF3O43395 683 aaKnown RBP22.18■■□□□ 1.14
PTCH1-227ENST00000553256 IFNAR1P17181 557 aa22.18■■□□□ 1.14
PTCH1-227ENST00000553256 CELF3Q5SZQ8 465 aaKnown RBP22.18■■□□□ 1.14
PTCH1-227ENST00000553256 ZNF713Q8N859 430 aaPredicted RBP22.18■■□□□ 1.14
PTCH1-227ENST00000553256 SMARCC2Q8TAQ2 1214 aa22.18■■□□□ 1.14
PTCH1-227ENST00000553256 PRDM5Q9NQX1 630 aaPredicted RBP22.18■■□□□ 1.14
PTCH1-227ENST00000553256 CCDC196A0A1B0GTZ2 297 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 KPNA6O60684 536 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 EPHB4P54760 987 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 LAMC2Q13753 1193 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 KCNV1Q6PIU1 500 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 TDHQ8IZJ6 230 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 PPTC7Q8NI37 304 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 ZNF274Q96GC6 653 aaPredicted RBP22.17■■□□□ 1.14
PTCH1-227ENST00000553256 CTAGE1Q96RT6 745 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 TMEM39AQ9NV64 488 aa22.17■■□□□ 1.14
PTCH1-227ENST00000553256 B4GALT4O60513 344 aa22.16■■□□□ 1.14
PTCH1-227ENST00000553256 TIMP1P01033 207 aa22.16■■□□□ 1.14
PTCH1-227ENST00000553256 MYL3P08590 195 aa22.16■■□□□ 1.14
PTCH1-227ENST00000553256 ITGB5P18084 799 aa22.16■■□□□ 1.14
PTCH1-227ENST00000553256 FGD1P98174 961 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms