RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SMIM5Q71RC9 77 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 TMC4Q7Z404 712 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 HEATR3Q7Z4Q2 680 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 FBXO33Q7Z6M2 555 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 TADA2BQ86TJ2 420 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 CABP7Q86V35 215 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 FNBP4Q8N3X1 1017 aaPredicted RBP6.02□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC155Q8N6L0 562 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 RETREG2Q8NC44 543 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 SLC44A5Q8NCS7 719 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 PNMA1Q8ND90 353 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 GLIS3Q8NEA6 775 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 NOC3LQ8WTT2 800 aaKnown RBP6.02□□□□□ -1.44
LIMA1-212ENST00000552491 MTMR8Q96EF0 704 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 TLR10Q9BXR5 811 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 SLC39A2Q9NP94 309 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 ZNHIT6Q9NWK9 470 aaKnown RBP6.02□□□□□ -1.44
LIMA1-212ENST00000552491 TFCP2L1Q9NZI6 479 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 JRKLQ9Y4A0 524 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 A0A1W2PQJ5 194 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 LRRC53A6NM62 1247 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 IPO7O95373 1038 aaKnown RBP6.02□□□□□ -1.45
LIMA1-212ENST00000552491 CPP00450 1065 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 KIF5BP33176 963 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 LIG3P49916 1009 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 GRM4Q14833 912 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 TRADDQ15628 312 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 KCTD19Q17RG1 926 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-212ENST00000552491 PARP10Q53GL7 1025 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 FIGNQ5HY92 759 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 IQCEQ6IPM2 695 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 TXNRD3Q86VQ6 643 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 AMOTL1Q8IY63 956 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 SH2D3CQ8N5H7 860 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 TRIM58Q8NG06 486 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 PPM1EQ8WY54 764 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 BAP1Q92560 729 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 C7orf25Q9BPX7 421 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 SH3GLB2Q9NR46 395 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 RBM12Q9NTZ6 932 aaKnown RBP6.02□□□□□ -1.45
LIMA1-212ENST00000552491 MCM9Q9NXL9 1143 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 SLAIN2Q9P270 581 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 SAMM50Q9Y512 469 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 DOT1LQ8TEK3 1739 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 A0A0G2JS52 829 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 ESYT3A0FGR9 886 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 MYMKA6NI61 221 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 EIF3HO15372 352 aaKnown RBP eCLIP6.02□□□□□ -1.45
LIMA1-212ENST00000552491 BUB1O43683 1085 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 ZPR1O75312 459 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 TACC1O75410 805 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 LCA5LO95447 670 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 GLI1P08151 1106 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 FAM153BP0C7A2 387 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 ATP6V1AP38606 617 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 TECP42680 631 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 GNGT1P63211 74 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 GFPT1Q06210 699 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-212ENST00000552491 PPFIA1Q13136 1202 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 SPA17Q15506 151 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 ASTE1Q2TB18 679 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-212ENST00000552491 LETM2Q2VYF4 491 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 FAM153CQ494X1 144 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 SBK1Q52WX2 424 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 CAVIN4Q5BKX8 364 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 CENPPQ6IPU0 288 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 CCDC70Q6NSX1 233 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 ANKRD18AQ8IVF6 992 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 EFCAB13Q8IY85 973 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 MICALL1Q8N3F8 863 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 DAGLBQ8NCG7 672 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 BCAS4Q8TDM0 211 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 FBXO41Q8TF61 875 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 ACSBG1Q96GR2 724 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 ZIM3Q96PE6 472 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 CAPS2Q9BXY5 557 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 MFRPQ9BY79 579 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 CRNKL1Q9BZJ0 848 aaKnown RBP6.02□□□□□ -1.45
LIMA1-212ENST00000552491 BARHL2Q9NY43 387 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 FAM153AQ9UHL3 310 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 FAM169AQ9Y6X4 670 aa6.02□□□□□ -1.45
LIMA1-212ENST00000552491 A0A087WUV0 522 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-212ENST00000552491 EDIL3O43854 480 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 CCNT1O60563 726 aaKnown RBP6.01□□□□□ -1.45
LIMA1-212ENST00000552491 KRT14P02533 472 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 OR52Z1P0C646 297 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 PRLRP16471 622 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 SLC1A4P43007 532 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 CARSP49589 748 aaKnown RBP6.01□□□□□ -1.45
LIMA1-212ENST00000552491 APBA1Q02410 837 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 RASSF7Q02833 373 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 ITIH3Q06033 890 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 KCNMA1Q12791 1236 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 GRB10Q13322 594 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 PDCLQ13371 301 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 GRIK5Q16478 980 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 VWA3BQ502W6 1294 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 KLHDC7AQ5VTJ3 777 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 HGSNATQ68CP4 663 aa6.01□□□□□ -1.45
LIMA1-212ENST00000552491 KCTD16Q68DU8 428 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms