RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PCDHB5Q9Y5E4 795 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 CD2APQ9Y5K6 639 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 WDR17Q8IZU2 1322 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 IGSF1Q8N6C5 1336 aa5.14□□□□□ -1.59
LIMA1-206ENST00000550611 SOWAHDA6NJG2 315 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 EXOC5O00471 708 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 TNFRSF1AP19438 455 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 YARSP54577 528 aaKnown RBP5.13□□□□□ -1.59
LIMA1-206ENST00000550611 RPL6Q02878 288 aaKnown RBP5.13□□□□□ -1.59
LIMA1-206ENST00000550611 KRTAP1-1Q07627 177 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 CLEC16AQ2KHT3 1053 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 AGMOQ6ZNB7 445 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 CEP128Q6ZU80 1094 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 TOM1L2Q6ZVM7 507 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 TTF2Q9UNY4 1162 aaKnown RBP5.13□□□□□ -1.59
LIMA1-206ENST00000550611 PCDHA5Q9Y5H7 936 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 RGPD3A6NKT7 1758 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-206ENST00000550611 RGPD4Q7Z3J3 1758 aa5.13□□□□□ -1.59
LIMA1-206ENST00000550611 FFAR3O14843 346 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 MPOP05164 745 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 PDIA4P13667 645 aaKnown RBP5.12□□□□□ -1.59
LIMA1-206ENST00000550611 RPL10P27635 214 aaKnown RBP5.12□□□□□ -1.59
LIMA1-206ENST00000550611 KCNC1P48547 511 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 ZXDAP98168 799 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 FMR1Q06787 632 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-206ENST00000550611 TMEM62Q0P6H9 643 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 TSNAXIP1Q2TAA8 658 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 TMEM201Q5SNT2 666 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 C9orf131Q5VYM1 1079 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 SLFN12Q8IYM2 578 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 SYTL5Q8TDW5 730 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-206ENST00000550611 VWCEQ96DN2 955 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 HHIPL1Q96JK4 782 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 KREMEN1Q96MU8 473 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 MIR1-1HGQ9H1L0 117 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 KLHL14Q9P2G3 628 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 ZMYM5Q9UJ78 669 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 RAB3GAP2Q9H2M9 1393 aa5.12□□□□□ -1.59
LIMA1-206ENST00000550611 ARHGEF28Q8N1W1 1705 aaKnown RBP5.11□□□□□ -1.59
LIMA1-206ENST00000550611 PARP4Q9UKK3 1724 aaKnown RBP5.11□□□□□ -1.59
LIMA1-206ENST00000550611 KAT6BQ8WYB5 2073 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 SDHBP21912 280 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 MAGEA10P43363 369 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-206ENST00000550611 SLURP1P55000 103 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 FAM13CQ8NE31 585 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 USP6P35125 1406 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 PPIP5K1Q6PFW1 1433 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 SLIT3O75094 1523 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 A0A0C4DFX4 3053 aa5.11□□□□□ -1.59
LIMA1-206ENST00000550611 A0A0G2JLW4 131 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 TMEM82A0PJX8 343 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 CTCFP49711 727 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-206ENST00000550611 PAPPAQ13219 1627 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 COL24A1Q17RW2 1714 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 UBXN11Q5T124 520 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 KCPQ6ZWJ8 1503 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 TTC21BQ7Z4L5 1316 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 NLGN1Q8N2Q7 840 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 USHBP1Q8N6Y0 703 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 KCNH5Q8NCM2 988 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 SMC1BQ8NDV3 1235 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 FRMD6Q96NE9 622 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 SETDB2Q96T68 719 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 PLCD4Q9BRC7 762 aa5.1□□□□□ -1.59
LIMA1-206ENST00000550611 CENPJQ9HC77 1338 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-206ENST00000550611 COL18A1P39060 1754 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 TOPAZ1Q8N9V7 1692 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 CPSF1Q10570 1443 aaKnown RBP5.09□□□□□ -1.59
LIMA1-206ENST00000550611 CCDC7Q96M83 1385 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 UPK3BL1B0FP48 263 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 UPK3BL2E5RIL1 263 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 IGFBP6P24592 240 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-206ENST00000550611 ARL4AP40617 200 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 MAPK8P45983 427 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 TNNI2P48788 182 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 LIG3P49916 1009 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 RTP1P59025 263 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 NMIQ13287 307 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-206ENST00000550611 LAPTM5Q13571 262 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 CBX2Q14781 532 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-206ENST00000550611 CCDC85BQ15834 202 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-206ENST00000550611 TMC6Q7Z403 805 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 DAGLBQ8NCG7 672 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 LINC00116Q8NCU8 138 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 HDAC8Q9BY41 377 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 ASCC2Q9H1I8 757 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-206ENST00000550611 SRRDQ9UH36 339 aa5.09□□□□□ -1.59
LIMA1-206ENST00000550611 KIAA1210Q9ULL0 1709 aa5.09□□□□□ -1.6
LIMA1-206ENST00000550611 LRRC37A3O60309 1634 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 TTC21AQ8NDW8 1320 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 IRS2Q9Y4H2 1338 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 C1QTNF3-AMACRE9PGA6 284 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 MATN3O15232 486 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 BUB1BO60566 1050 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-206ENST00000550611 HSPA8P11142 646 aaKnown RBP5.08□□□□□ -1.6
LIMA1-206ENST00000550611 PLCG1P19174 1290 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 MAPK1P28482 360 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 PCBP3P57721 371 aaKnown RBP5.08□□□□□ -1.6
LIMA1-206ENST00000550611 ADAM17P78536 824 aa5.08□□□□□ -1.6
LIMA1-206ENST00000550611 ATP2B2Q01814 1243 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms