RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 PURAQ00577 322 aaKnown RBP13.62□□□□□ -0.23
SYNE1-238ENST00000540663 ITGA7Q13683 1181 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 XRRA1Q6P2D8 792 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 SEPT14Q6ZU15 432 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 SH3RF1Q7Z6J0 888 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 FCHSD1Q86WN1 690 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 RAB11FIP4Q86YS3 637 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 SMARCC2Q8TAQ2 1214 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 EMID1Q96A84 441 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-238ENST00000540663 MTG1Q9BT17 334 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-238ENST00000540663 TBX21Q9UL17 535 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 BRPF3Q9ULD4 1205 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 MRVI1Q9Y6F6 885 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 KIAA1217Q5T5P2 1943 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 CNTNAP5Q8WYK1 1306 aa13.62□□□□□ -0.23
SYNE1-238ENST00000540663 hCG_1984214I3L0E3 225 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 MYCLP12524 364 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-238ENST00000540663 RAG1P15918 1043 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 CASTP20810 708 aaKnown RBP13.61□□□□□ -0.23
SYNE1-238ENST00000540663 ARHGAP1Q07960 439 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 FUT2Q10981 343 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 LY6KQ17RY6 165 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 LRIT3Q3SXY7 679 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 PPP1R18Q6NYC8 613 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 Q6ZUG5 572 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 FAM126BQ8IXS8 530 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 CMTR1Q8N1G2 835 aaKnown RBP13.61□□□□□ -0.23
SYNE1-238ENST00000540663 ZNF713Q8N859 430 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-238ENST00000540663 USP26Q9BXU7 913 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 AGXT2Q9BYV1 514 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 TM6SF1Q9BZW5 370 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 PSTPIP2Q9H939 334 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 DDX41Q9UJV9 622 aaKnown RBP13.61□□□□□ -0.23
SYNE1-238ENST00000540663 LAMA3Q16787 3333 aa13.61□□□□□ -0.23
SYNE1-238ENST00000540663 MEIS2O14770 477 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 CD4P01730 458 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 MYL3P08590 195 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 METAP2P50579 478 aaKnown RBP eCLIP13.6□□□□□ -0.23
SYNE1-238ENST00000540663 LAMC2Q13753 1193 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 GNPTABQ3T906 1256 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 HEATR3Q7Z4Q2 680 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 CCDC82Q8N4S0 544 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 IL31RAQ8NI17 732 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 COPS5Q92905 334 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 BADQ92934 168 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 BRF1Q92994 677 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 GLT8D2Q9H1C3 349 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 NAP1L2Q9ULW6 460 aaPredicted RBP13.6□□□□□ -0.23
SYNE1-238ENST00000540663 GRIN2DO15399 1336 aa13.6□□□□□ -0.23
SYNE1-238ENST00000540663 RGS20O76081 388 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 TIMP1P01033 207 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 SUPT20HL2P0C7V6 817 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 CPA1P15085 419 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 PTPN11Q06124 597 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-238ENST00000540663 APOBRQ0VD83 1088 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 DGKDQ16760 1214 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 PCNX4Q63HM2 1172 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 NFRKBQ6P4R8 1299 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 USP17L6PQ6QN14 398 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 RUFY3Q7L099 469 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 DHX37Q8IY37 1157 aaKnown RBP13.59□□□□□ -0.23
SYNE1-238ENST00000540663 PPTC7Q8NI37 304 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 AFG1LQ8WV93 481 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 INPP4AQ96PE3 977 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-238ENST00000540663 ALDH8A1Q9H2A2 487 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-238ENST00000540663 EHMT1Q9H9B1 1298 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 ZSWIM6Q9HCJ5 1215 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 FAM217BQ9NTX9 383 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-238ENST00000540663 CYP46A1Q9Y6A2 500 aa13.59□□□□□ -0.23
SYNE1-238ENST00000540663 SCN10AQ9Y5Y9 1956 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 hCG_1642624A0A1W2PR95 340 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 MMP3P08254 477 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 ICAM3P32942 547 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 EVCP57679 992 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 PSMC6P62333 389 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 FPGSQ05932 587 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 CELF3Q5SZQ8 465 aaKnown RBP13.58□□□□□ -0.24
SYNE1-238ENST00000540663 MFSD5Q6N075 450 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 GPR153Q6NV75 609 aa13.58□□□□□ -0.24
SYNE1-238ENST00000540663 V9GY48 417 aaPredicted RBP13.58□□□□□ -0.24
SYNE1-238ENST00000540663 LAMA2P24043 3122 aaKnown RBP13.58□□□□□ -0.24
SYNE1-238ENST00000540663 SPDYE3A6NKU9 549 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 FIBPO43427 364 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 HOXD8P13378 290 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-238ENST00000540663 ITGB8P26012 769 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 CDC27P30260 824 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 ADD1P35611 737 aaKnown RBP13.57□□□□□ -0.24
SYNE1-238ENST00000540663 NAPAP54920 295 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 MRPS9P82933 396 aaKnown RBP13.57□□□□□ -0.24
SYNE1-238ENST00000540663 PPIGQ13427 754 aaKnown RBP eCLIP13.57□□□□□ -0.24
SYNE1-238ENST00000540663 NBPF20Q3BBV1 942 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 MYSM1Q5VVJ2 828 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 WWC2Q6AWC2 1192 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 TMEM199Q8N511 208 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 GPKOWQ92917 476 aaPredicted RBP eCLIP13.57□□□□□ -0.24
SYNE1-238ENST00000540663 CDHR1Q96JP9 859 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 KATNAL1Q9BW62 490 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 HIPK3Q9H422 1215 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 RIC8AQ9NPQ8 531 aa13.57□□□□□ -0.24
SYNE1-238ENST00000540663 BARHL2Q9NY43 387 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms