RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 DIS3L2Q8IYB7 885 aaKnown RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 KIF2BQ8N4N8 673 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 SH2D3CQ8N5H7 860 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 NMD3Q96D46 503 aaKnown RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 CCDC90BQ9GZT6 254 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 SNX25Q9H3E2 840 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 A0A1W2PQ27 194 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 A0A1W2PQ64 194 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 A0A1W2PQD8 194 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 N4BP1O75113 896 aaKnown RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 FTCDO95954 541 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 MT-ND3P03897 115 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 GABPB2Q8TAK5 448 aaPredicted RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 PHKBQ93100 1093 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 C6orf50Q9HD87 102 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 ANKFY1Q9P2R3 1169 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 MROH2BQ7Z745 1585 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 EXOC1LA0A1B0GW35 172 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 NBNO60934 754 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 BTNL9Q6UXG8 535 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 ZNF354CQ86Y25 554 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.47□□□□□ -0.89
YBX3-208ENST00000540447 C19orf44Q9H6X5 657 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 RSPH10B2B2RC85 870 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 RSPH10BP0C881 870 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 HSPA8P11142 646 aaKnown RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 STAT1P42224 750 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 SERPINB8P50452 374 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 MKRN3Q13064 507 aaKnown RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 LRRC36Q1X8D7 754 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 RABGAP1LQ5R372 815 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 BTN2A1Q7KYR7 527 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 TUBGCP3Q96CW5 907 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 CCT7Q99832 543 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 GORASP1Q9BQQ3 440 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 DNAJC17Q9NVM6 304 aaKnown RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 ZMYND8Q9ULU4 1186 aaPredicted RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 PHF20L1A8MW92 1017 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 H0Y626 953 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 STRNO43815 780 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 VIL1P09327 827 aaKnown RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 GPTP24298 496 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 CCDC103Q8IW40 242 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 ZKSCAN4Q969J2 545 aaPredicted RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 SCYL1Q96KG9 808 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 ANAPC5Q9UJX4 755 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 CFAP69A5D8W1 941 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 DEXIO95424 95 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 ATP6V1G2O95670 118 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 PREPLQ4J6C6 727 aaPredicted RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 KRT40Q6A162 431 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 TMEM87AQ8NBN3 555 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 C3orf20Q8ND61 904 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 PARD3BQ8TEW8 1205 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 RIN2Q8WYP3 895 aaPredicted RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 ANKRD27Q96NW4 1050 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 CUEDC2Q9H467 287 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 MAP3K2Q9Y2U5 619 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 USP15Q9Y4E8 981 aaPredicted RBP9.47□□□□□ -0.89
YBX3-208ENST00000540447 PARP3Q9Y6F1 533 aa9.47□□□□□ -0.89
YBX3-208ENST00000540447 AOX1Q06278 1338 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 BCRP11274 1271 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 SLC12A2P55011 1212 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 STX1BP61266 288 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 DR1Q01658 176 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 PTGISQ16647 500 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 ATP11CQ8NB49 1132 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 MPP4Q96JB8 637 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 FAM81BQ96LP2 452 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 CNBD2Q96M20 576 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 RNPEPQ9H4A4 650 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 TAF1DQ9H5J8 278 aaPredicted RBP9.46□□□□□ -0.89
YBX3-208ENST00000540447 ARHGAP26Q9UNA1 814 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 RNF103-CHMP3A0A140T963 221 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 ESYT2A0FGR8 921 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 TOM1L1O75674 476 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 ECEL1O95672 775 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 SLC5A1P13866 664 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 TTC38Q5R3I4 469 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 CDH24Q86UP0 819 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 SSH2Q76I76 1423 aa9.46□□□□□ -0.89
YBX3-208ENST00000540447 GTPBP10A4D1E9 387 aaKnown RBP9.46□□□□□ -0.9
YBX3-208ENST00000540447 ZCCHC18P0CG32 403 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 MECOMQ03112 1051 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 NFRKBQ6P4R8 1299 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 CRLF3Q8IUI8 442 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 MLXIPLQ9NP71 852 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 DCTN4Q9UJW0 460 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 ZMYM4Q5VZL5 1548 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 ARPC4P59998 168 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 POLR2FP61218 127 aaKnown RBP9.46□□□□□ -0.9
YBX3-208ENST00000540447 IFIT5Q13325 482 aaKnown RBP9.46□□□□□ -0.9
YBX3-208ENST00000540447 R3HDM1Q15032 1099 aaKnown RBP9.46□□□□□ -0.9
YBX3-208ENST00000540447 KCTD21Q4G0X4 260 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 POTEEQ6S8J3 1075 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 EPM2AIP1Q7L775 607 aaPredicted RBP9.46□□□□□ -0.9
YBX3-208ENST00000540447 LBHD1Q9BQE6 289 aaPredicted RBP9.46□□□□□ -0.9
YBX3-208ENST00000540447 CDK19Q9BWU1 502 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 AP1M1Q9BXS5 423 aa9.46□□□□□ -0.9
YBX3-208ENST00000540447 NHEJ1Q9H9Q4 299 aaPredicted RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms