RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PTCH2Q9Y6C5 1203 aa21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 DDX49Q9Y6V7 483 aaKnown RBP21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MKI67P46013 3256 aaKnown RBP21.51■■□□□ 1.03
TNFRSF1A-213ENST00000540022 GNRH1P01148 92 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CIITAP33076 1130 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ZNF792Q3KQV3 632 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MORN1Q5T089 497 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PCNX4Q63HM2 1172 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 GDPD2Q9HCC8 539 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ADD3Q9UEY8 706 aaKnown RBP21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CFAP45Q9UL16 551 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PDE4DIPQ5VU43 2346 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 FAM86B1E9PN63 330 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 FIBPO43427 364 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 NR3C2P08235 984 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 FAM86B2P0C5J1 330 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MRPS9P82933 396 aaKnown RBP21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PRKCZQ05513 592 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PTPAQ15257 358 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PPP4R3AQ6IN85 833 aa21.5■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CYP3A7-CYP3A51PA0A087WV96 503 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 SLC37A4O43826 429 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MYCLP12524 364 aaPredicted RBP21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CYP3A7P24462 503 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MOXD1Q6UVY6 613 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 DPP9Q86TI2 863 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 VSIG10LQ86VR7 867 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 LINC00301Q8NCQ3 95 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CYP2W1Q8TAV3 490 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ARMC5Q96C12 935 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MBOAT7Q96N66 472 aa21.49■■□□□ 1.03
TNFRSF1A-213ENST00000540022 YEATS4O95619 227 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 GCFC2P16383 781 aaKnown RBP21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 EDNRBP24530 442 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ZNF76P36508 570 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MAP2K5Q13163 448 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 SLC39A14Q15043 492 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 NPLOC4Q8TAT6 608 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 LEO1Q8WVC0 666 aaPredicted RBP21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 USP6NLQ92738 828 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 GBP4Q96PP9 640 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 IWS1Q96ST2 819 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 NAP1L4Q99733 375 aaKnown RBP21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 RCOR1Q9UKL0 485 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MRVI1Q9Y6F6 885 aa21.48■■□□□ 1.03
TNFRSF1A-213ENST00000540022 IGLV3-22A0A075B6J6 115 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CCND2P30279 289 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 FLT3LGP49771 235 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MLLT1Q03111 559 aaPredicted RBP21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PTGDRQ13258 359 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ORC2Q13416 577 aaPredicted RBP21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 STK38Q15208 465 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 C4orf32Q8N8J7 132 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 LENG9Q96B70 501 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 NUDT12Q9BQG2 462 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 SCAND2PQ9GZW5 306 aaPredicted RBP21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 TMEM60Q9H2L4 133 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 SRRDQ9UH36 339 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 DDX25Q9UHL0 483 aaKnown RBP21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 UBIAD1Q9Y5Z9 338 aa21.47■■□□□ 1.03
TNFRSF1A-213ENST00000540022 ITGB5P18084 799 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PRMT2P55345 433 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CEP55Q53EZ4 464 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PRR16Q569H4 304 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 XRRA1Q6P2D8 792 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 POTEDQ86YR6 584 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 SPATA32Q96LK8 384 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 MXRA8Q9BRK3 442 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 CEP131Q9UPN4 1083 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 DIS3Q9Y2L1 958 aaKnown RBP21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 LCTP09848 1927 aa21.46■■□□□ 1.03
TNFRSF1A-213ENST00000540022 PLXNB2O15031 1838 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 NEMFO60524 1076 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 CYP2B6P20813 491 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 ATP2C1P98194 919 aaPredicted RBP21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 SLC9C1Q4G0N8 1177 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 Q4G0T1 1027 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 SOCS4Q8WXH5 440 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 MAML3Q96JK9 1138 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 MEIS1O00470 390 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 SPTLC2O15270 562 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 BMP15O95972 392 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 HOXC6P09630 235 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 MARCKSP29966 332 aaPredicted RBP21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 STXBP2Q15833 593 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 PLA2G4DQ86XP0 818 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 MORC4Q8TE76 937 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 ZNF333Q96JL9 665 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 SLC5A4Q9NY91 659 aa21.45■■□□□ 1.02
TNFRSF1A-213ENST00000540022 LOC102724159A0A0B4J2E5 919 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 B4DLN1 442 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 RGS20O76081 388 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 HOXD10P28358 340 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 RGS2P41220 211 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 PDE4DQ08499 809 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 PWP2Q15269 919 aaKnown RBP21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 CCL14Q16627 93 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 ZNF467Q7Z7K2 595 aaPredicted RBP21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 KCNG4Q8TDN1 519 aa21.44■■□□□ 1.02
TNFRSF1A-213ENST00000540022 INPP4AQ96PE3 977 aaPredicted RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms