RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 SPC25Q9HBM1 224 aa26.09■■□□□ 1.77
SFSWAP-204ENST00000535399 PHF24Q9UPV7 400 aa26.09■■□□□ 1.77
SFSWAP-204ENST00000535399 C6orf222P0C671 652 aaPredicted RBP26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 MRPS9P82933 396 aaKnown RBP26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 TTLL4Q14679 1199 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 RABEP1Q15276 862 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 TSEN34Q9BSV6 310 aaKnown RBP26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 HTATIP2Q9BUP3 242 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 SENP6Q9GZR1 1112 aaPredicted RBP26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 ZMYND12Q9H0C1 365 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 GLT8D2Q9H1C3 349 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 PCDHA6Q9UN73 950 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 LIMCH1Q9UPQ0 1083 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 PCDHA8Q9Y5H6 950 aa26.08■■□□□ 1.77
SFSWAP-204ENST00000535399 TNRC18O15417 2968 aaPredicted RBP26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 CDKL5O76039 1030 aa26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 DEXIO95424 95 aa26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 TXNP10599 105 aaKnown RBP26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 CLK2P49760 499 aaKnown RBP26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 KCNA10Q16322 511 aa26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 CCDC12Q8WUD4 166 aaPredicted RBP26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 COPS5Q92905 334 aa26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 ZFP91Q96JP5 570 aaPredicted RBP26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 AP5M1Q9H0R1 490 aa26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 VPS54Q9P1Q0 977 aa26.07■■□□□ 1.76
SFSWAP-204ENST00000535399 SPDYE3A6NKU9 549 aa26.06■■□□□ 1.76
SFSWAP-204ENST00000535399 ADAMTS3O15072 1205 aa26.06■■□□□ 1.76
SFSWAP-204ENST00000535399 NKRFO15226 690 aaKnown RBP eCLIP26.06■■□□□ 1.761e-6■□□□□ 10.8
SFSWAP-204ENST00000535399 DTNBO60941 627 aa26.06■■□□□ 1.76
SFSWAP-204ENST00000535399 ST3GAL1Q11201 340 aa26.06■■□□□ 1.76
SFSWAP-204ENST00000535399 PCNX4Q63HM2 1172 aa26.06■■□□□ 1.76
SFSWAP-204ENST00000535399 SH3GLB2Q9NR46 395 aa26.06■■□□□ 1.76
SFSWAP-204ENST00000535399 STK36Q9NRP7 1315 aa26.06■■□□□ 1.76
SFSWAP-204ENST00000535399 BEX3Q00994 111 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 FSCN1Q16658 493 aaKnown RBP26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 LY6KQ17RY6 165 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 GNASQ5JWF2 1037 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 XRRA1Q6P2D8 792 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 FERMT2Q96AC1 680 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 AIFM3Q96NN9 605 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 INPP4AQ96PE3 977 aaPredicted RBP26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 C6orf50Q9HD87 102 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 TMEM260Q9NX78 707 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 DDX41Q9UJV9 622 aaKnown RBP26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 PDE4DIPQ5VU43 2346 aa26.05■■□□□ 1.76
SFSWAP-204ENST00000535399 MOXD2PA6NHM9 499 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 STAM2O75886 525 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 FOSP01100 380 aaPredicted RBP26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 ACLYP53396 1101 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 AP3B2Q13367 1082 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 PCSK9Q8NBP7 692 aaKnown RBP26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 CCDC148Q8NFR7 591 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 OR6J1Q8NGC5 347 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 PGBD1Q96JS3 809 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 MRVI1Q9Y6F6 885 aa26.04■■□□□ 1.76
SFSWAP-204ENST00000535399 A0A1W2PQ45 241 aaPredicted RBP26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 A0A1W2PQY0 241 aa26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 GNA11P29992 359 aa26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 LRRC26Q2I0M4 334 aa26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 NSUN7Q8NE18 718 aaKnown RBP26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 DPF3Q92784 378 aa26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 ANO3Q9BYT9 981 aa26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 RTEL1Q9NZ71 1219 aa26.03■■□□□ 1.76
SFSWAP-204ENST00000535399 ASGR1P07306 291 aa26.02■■□□□ 1.76
SFSWAP-204ENST00000535399 ATN1P54259 1190 aaPredicted RBP26.02■■□□□ 1.76
SFSWAP-204ENST00000535399 SEMA3FQ13275 785 aa26.02■■□□□ 1.76
SFSWAP-204ENST00000535399 JAKMIP3Q5VZ66 844 aa26.02■■□□□ 1.76
SFSWAP-204ENST00000535399 EHMT1Q9H9B1 1298 aa26.02■■□□□ 1.76
SFSWAP-204ENST00000535399 ORC3Q9UBD5 711 aaPredicted RBP26.02■■□□□ 1.76
SFSWAP-204ENST00000535399 FDPSP14324 419 aaKnown RBP26.01■■□□□ 1.75
SFSWAP-204ENST00000535399 ICAM3P32942 547 aa26.01■■□□□ 1.75
SFSWAP-204ENST00000535399 ARHGAP1Q07960 439 aa26.01■■□□□ 1.75
SFSWAP-204ENST00000535399 GNPTABQ3T906 1256 aa26.01■■□□□ 1.75
SFSWAP-204ENST00000535399 KCNV1Q6PIU1 500 aa26.01■■□□□ 1.75
SFSWAP-204ENST00000535399 SLC39A5Q6ZMH5 540 aa26.01■■□□□ 1.75
SFSWAP-204ENST00000535399 ZSCAN31Q96LW9 406 aaPredicted RBP26.01■■□□□ 1.75
SFSWAP-204ENST00000535399 SPATA31C2B4DYI2 1134 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 GH1P01241 217 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 TGFB3P10600 412 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 NLRP5P59047 1200 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 SP2Q02086 613 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 SNX17Q15036 470 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 FAM177A1Q8N128 213 aaPredicted RBP26■■□□□ 1.75
SFSWAP-204ENST00000535399 REXO1Q8N1G1 1221 aaKnown RBP26■■□□□ 1.75
SFSWAP-204ENST00000535399 IL27Q8NEV9 243 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 BICD2Q8TD16 824 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 UBIAD1Q9Y5Z9 338 aa26■■□□□ 1.75
SFSWAP-204ENST00000535399 A6NJR5 290 aa25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 ZEB2O60315 1214 aa25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 JAK2O60674 1132 aa25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 ITGB5P18084 799 aa25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 SREBF1P36956 1147 aa25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 NPY5RQ15761 445 aa25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 RASGRP4Q8TDF6 673 aa25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 EMID1Q96A84 441 aaPredicted RBP25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 SH2B1Q9NRF2 756 aaPredicted RBP25.99■■□□□ 1.75
SFSWAP-204ENST00000535399 FIBPO43427 364 aa25.98■■□□□ 1.75
SFSWAP-204ENST00000535399 ST18O60284 1047 aa25.98■■□□□ 1.75
SFSWAP-204ENST00000535399 EVI5O60447 810 aa25.98■■□□□ 1.75
SFSWAP-204ENST00000535399 UBA1P22314 1058 aaKnown RBP25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms