RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CCDC158Q5M9N0 1113 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 LRRC8DQ7L1W4 858 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 DGLUCYQ7Z3D6 616 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 CCDC155Q8N6L0 562 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 FAM133AQ8N9E0 248 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 NKD2Q969F2 451 aaPredicted RBP7.79□□□□□ -1.16
CD44-237ENST00000534082 RMDN1Q96DB5 314 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 SAMD11Q96NU1 681 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 MEIS3Q99687 375 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 DBNDD2Q9BQY9 259 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 RIOK1Q9BRS2 568 aaKnown RBP7.79□□□□□ -1.16
CD44-237ENST00000534082 RAVER2Q9HCJ3 691 aaKnown RBP7.79□□□□□ -1.16
CD44-237ENST00000534082 HOMER2Q9NSB8 354 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 INSL6Q9Y581 213 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 CTDP1Q9Y5B0 961 aaPredicted RBP7.79□□□□□ -1.16
CD44-237ENST00000534082 ATRXP46100 2492 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 LOC730098B7Z3J9 87 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 H3BNC9 293 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 EFCAB14O75071 495 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 ZBED4O75132 1171 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 CXCL10P02778 98 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 SELPP16109 830 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 CPT1AP50416 773 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 HYAL1Q12794 435 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 MTX1Q13505 466 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 IQSEC1Q6DN90 963 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 TAPT1Q6NXT6 567 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 NFRKBQ6P4R8 1299 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 EEPD1Q7L9B9 569 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 FRMD5Q7Z6J6 570 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 CHST13Q8NET6 341 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 CAGE1Q8TC20 777 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 SSH1Q8WYL5 1049 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 DYNLL2Q96FJ2 89 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 ZNF512BQ96KM6 892 aaPredicted RBP7.78□□□□□ -1.16
CD44-237ENST00000534082 MTRQ99707 1265 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 CRNKL1Q9BZJ0 848 aaKnown RBP7.78□□□□□ -1.16
CD44-237ENST00000534082 CD207Q9UJ71 328 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 SCN10AQ9Y5Y9 1956 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 MYH8P13535 1937 aa7.78□□□□□ -1.16
CD44-237ENST00000534082 MAGEB6P1A0A0J9YX57 407 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 NBNO60934 754 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 PDGFBP01127 241 aaPredicted RBP7.77□□□□□ -1.17
CD44-237ENST00000534082 HTRA4P83105 476 aaPredicted RBP7.77□□□□□ -1.17
CD44-237ENST00000534082 PTPN11Q06124 597 aaPredicted RBP7.77□□□□□ -1.17
CD44-237ENST00000534082 IKBKEQ14164 716 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 CBX2Q14781 532 aaPredicted RBP7.77□□□□□ -1.17
CD44-237ENST00000534082 PTGISQ16647 500 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 CCDC184Q52MB2 194 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 TNNI3KQ59H18 835 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 MCTP2Q6DN12 878 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 KIAA1211Q6ZU35 1233 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 FBXO11Q86XK2 927 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 PRPF38AQ8NAV1 312 aaKnown RBP7.77□□□□□ -1.17
CD44-237ENST00000534082 SDR42E1Q8WUS8 393 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 KIFC2Q96AC6 838 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 CCDC17Q96LX7 622 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 ACAD9Q9H845 621 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 KANSL2Q9H9L4 492 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 SLC38A10Q9HBR0 1119 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 VTA1Q9NP79 307 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 A1CFQ9NQ94 594 aaKnown RBP7.77□□□□□ -1.17
CD44-237ENST00000534082 COG6Q9Y2V7 657 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 FPGT-TNNI3KV9GXZ4 949 aa7.77□□□□□ -1.17
CD44-237ENST00000534082 EP300Q09472 2414 aaPredicted RBP7.76□□□□□ -1.17
CD44-237ENST00000534082 USP17L12C9JPN9 530 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 USP17L21D6R901 530 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 RBAK-RBAKDNI3L0D1 243 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 LINC01565O15544 149 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 PARNO95453 639 aaKnown RBP7.76□□□□□ -1.17
CD44-237ENST00000534082 NDUFB10O96000 172 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 AMHP03971 560 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 OAZ1P54368 228 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 G3BP1Q13283 466 aaKnown RBP eCLIP7.76□□□□□ -1.17
CD44-237ENST00000534082 DUSP28Q4G0W2 176 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 SMYD5Q6GMV2 418 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 TMED8Q6PL24 325 aaPredicted RBP7.76□□□□□ -1.17
CD44-237ENST00000534082 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.76□□□□□ -1.17
CD44-237ENST00000534082 TMEM192Q8IY95 271 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 MYOCDQ8IZQ8 938 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 OR6J1Q8NGC5 347 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 DHX38Q92620 1227 aaKnown RBP7.76□□□□□ -1.17
CD44-237ENST00000534082 CTAGE1Q96RT6 745 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 YME1L1Q96TA2 773 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 IL21Q9HBE4 155 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 DCP1AQ9NPI6 582 aaPredicted RBP7.76□□□□□ -1.17
CD44-237ENST00000534082 GPR108Q9NPR9 543 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 RNF146Q9NTX7 359 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 ADGRG1Q9Y653 693 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 MYO7AQ13402 2215 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 ATG2AQ2TAZ0 1938 aa7.76□□□□□ -1.17
CD44-237ENST00000534082 FRYLO94915 3013 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 E9PSI1 815 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 EYA4O95677 639 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 GTF2F1P35269 517 aaKnown RBP eCLIP7.75□□□□□ -1.17
CD44-237ENST00000534082 CDK8P49336 464 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 NDUFV1P49821 464 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 CHMP4BP1P59074 171 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 COPS2P61201 443 aa7.75□□□□□ -1.17
CD44-237ENST00000534082 RBL2Q08999 1139 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms