RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 SMCO2A6NFE2 343 aa16.63■□□□□ 0.25
FOXR1-202ENST00000531539 PIK3CDO00329 1044 aa16.63■□□□□ 0.25
FOXR1-202ENST00000531539 PRPF3O43395 683 aaKnown RBP16.63■□□□□ 0.25
FOXR1-202ENST00000531539 BRDTQ58F21 947 aaPredicted RBP16.63■□□□□ 0.25
FOXR1-202ENST00000531539 CHRDL2Q6WN34 429 aa16.63■□□□□ 0.25
FOXR1-202ENST00000531539 SLC26A6Q9BXS9 759 aa16.63■□□□□ 0.25
FOXR1-202ENST00000531539 PRKAG2Q9UGJ0 569 aa16.63■□□□□ 0.25
FOXR1-202ENST00000531539 DDX41Q9UJV9 622 aaKnown RBP16.63■□□□□ 0.25
FOXR1-202ENST00000531539 COLQQ9Y215 455 aaPredicted RBP16.63■□□□□ 0.25
FOXR1-202ENST00000531539 MRVI1Q9Y6F6 885 aa16.63■□□□□ 0.25
FOXR1-202ENST00000531539 ELP1O95163 1332 aa16.63■□□□□ 0.25
FOXR1-202ENST00000531539 STXBP3O00186 592 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 SORBS3O60504 671 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 PQBP1O60828 265 aaKnown RBP16.62■□□□□ 0.25
FOXR1-202ENST00000531539 CABYRO75952 493 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 RGS20O76081 388 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 GH1P01241 217 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 CPT1AP50416 773 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 SNX17Q15036 470 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 NTRK3Q16288 839 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 PFKFB3Q16875 520 aaPredicted RBP16.62■□□□□ 0.25
FOXR1-202ENST00000531539 C8orf34Q49A92 452 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 C1orf53Q5VUE5 145 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 TYW1BQ6NUM6 668 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 ALDH8A1Q9H2A2 487 aaPredicted RBP16.62■□□□□ 0.25
FOXR1-202ENST00000531539 PRDM5Q9NQX1 630 aaPredicted RBP16.62■□□□□ 0.25
FOXR1-202ENST00000531539 BARHL2Q9NY43 387 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 PCDHA6Q9UN73 950 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 PCDHA8Q9Y5H6 950 aa16.62■□□□□ 0.25
FOXR1-202ENST00000531539 A0A0U1RQG5 324 aaPredicted RBP16.61■□□□□ 0.25
FOXR1-202ENST00000531539 SPDYE3A6NKU9 549 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 DCDC2CA8MYV0 355 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 hCG_1984214I3L0E3 225 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 ARVCFO00192 962 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 CPLX1O14810 134 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 SCG2P13521 617 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 IFNAR1P17181 557 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 ADCY7P51828 1080 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 NEK4P51957 841 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 PSMC6P62333 389 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 MRPS9P82933 396 aaKnown RBP16.61■□□□□ 0.25
FOXR1-202ENST00000531539 SSRP1Q08945 709 aaKnown RBP16.61■□□□□ 0.25
FOXR1-202ENST00000531539 PKN1Q16512 942 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 KCNV1Q6PIU1 500 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 DHX37Q8IY37 1157 aaKnown RBP16.61■□□□□ 0.25
FOXR1-202ENST00000531539 ZNF713Q8N859 430 aaPredicted RBP16.61■□□□□ 0.25
FOXR1-202ENST00000531539 AFG1LQ8WV93 481 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 RIC8AQ9NPQ8 531 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 POLR3EQ9NVU0 708 aa16.61■□□□□ 0.25
FOXR1-202ENST00000531539 A6NJR5 290 aa16.6■□□□□ 0.25
FOXR1-202ENST00000531539 CDK7P50613 346 aa16.6■□□□□ 0.25
FOXR1-202ENST00000531539 AK2P54819 239 aa16.6■□□□□ 0.25
FOXR1-202ENST00000531539 ITGA7Q13683 1181 aa16.6■□□□□ 0.25
FOXR1-202ENST00000531539 PPP1R18Q6NYC8 613 aa16.6■□□□□ 0.25
FOXR1-202ENST00000531539 SH3RF1Q7Z6J0 888 aa16.6■□□□□ 0.25
FOXR1-202ENST00000531539 SLKQ9H2G2 1235 aaPredicted RBP16.6■□□□□ 0.25
FOXR1-202ENST00000531539 RBM27Q9P2N5 1060 aaKnown RBP16.6■□□□□ 0.25
FOXR1-202ENST00000531539 ALPK3Q96L96 1907 aa16.6■□□□□ 0.25
FOXR1-202ENST00000531539 TRIM43BA6NCK2 446 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 KPNA6O60684 536 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 TGFB3P10600 412 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 CHMP4BP1P59074 171 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 MDM2Q00987 491 aaPredicted RBP16.59■□□□□ 0.25
FOXR1-202ENST00000531539 SP2Q02086 613 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 ARHGAP1Q07960 439 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 LAMC2Q13753 1193 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 ANKRD1Q15327 319 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 GNPTABQ3T906 1256 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 PCNX4Q63HM2 1172 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 XRRA1Q6P2D8 792 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 CPLX2Q6PUV4 134 aaKnown RBP16.59■□□□□ 0.25
FOXR1-202ENST00000531539 TRIM43Q96BQ3 446 aaPredicted RBP16.59■□□□□ 0.25
FOXR1-202ENST00000531539 PGBD1Q96JS3 809 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 MTG1Q9BT17 334 aaPredicted RBP16.59■□□□□ 0.25
FOXR1-202ENST00000531539 RNF26Q9BY78 433 aaPredicted RBP16.59■□□□□ 0.25
FOXR1-202ENST00000531539 GLT8D2Q9H1C3 349 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 MLXIPQ9HAP2 919 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 TMEM39AQ9NV64 488 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 TMEM260Q9NX78 707 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 TPCN1Q9ULQ1 816 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 NID2Q14112 1375 aa16.59■□□□□ 0.25
FOXR1-202ENST00000531539 SPATA31C2B4DYI2 1134 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 STAM2O75886 525 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 GGPS1O95749 300 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 FOSP01100 380 aaPredicted RBP16.58■□□□□ 0.24
FOXR1-202ENST00000531539 CLTBP09497 229 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 MAGEA10P43363 369 aaPredicted RBP16.58■□□□□ 0.24
FOXR1-202ENST00000531539 PURAQ00577 322 aaKnown RBP16.58■□□□□ 0.24
FOXR1-202ENST00000531539 FAAP100Q0VG06 881 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 CELF3Q5SZQ8 465 aaKnown RBP16.58■□□□□ 0.24
FOXR1-202ENST00000531539 JAKMIP3Q5VZ66 844 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 ANKRD33Q7Z3H0 272 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 NLRX1Q86UT6 975 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 TRIM22Q8IYM9 498 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 IL17RAQ96F46 866 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 TOX2Q96NM4 488 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 LBHD1Q9BQE6 289 aaPredicted RBP16.58■□□□□ 0.24
FOXR1-202ENST00000531539 BCAS3Q9H6U6 928 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 EHMT1Q9H9B1 1298 aa16.58■□□□□ 0.24
FOXR1-202ENST00000531539 C6orf50Q9HD87 102 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms