RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 USP17L22D6RA61 530 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 USP17L17D6RBQ6 530 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 USP17L19D6RCP7 530 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 USP17L20D6RJB6 530 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 GCFC2P16383 781 aaKnown RBP19.58■□□□□ 0.72
USH1C-205ENST00000527020 USP17L24Q0WX57 530 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 HYIQ5T013 277 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 USP17L6PQ6QN14 398 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 LRRC55Q6ZSA7 311 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 HAUS4Q9H6D7 363 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 SIK3Q9Y2K2 1263 aa19.58■□□□□ 0.72
USH1C-205ENST00000527020 IDEP14735 1019 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 TSR1Q2NL82 804 aaKnown RBP19.57■□□□□ 0.72
USH1C-205ENST00000527020 VWA3BQ502W6 1294 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 DACT2Q5SW24 774 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 ZNF662Q6ZS27 426 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 MRIQ9BWK5 157 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 NYAP2Q9P242 653 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 RCCD1A6NED2 376 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 DCAF4Q8WV16 495 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 IDI2Q9BXS1 227 aa19.57■□□□□ 0.72
USH1C-205ENST00000527020 DHX36Q9H2U1 1008 aaKnown RBP19.57■□□□□ 0.72
USH1C-205ENST00000527020 NHEJ1Q9H9Q4 299 aaPredicted RBP19.57■□□□□ 0.72
USH1C-205ENST00000527020 PSMD14O00487 310 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 EPHB6O15197 1021 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 ATP8B1O43520 1251 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 PSMD2Q13200 908 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 LRRC41Q15345 812 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 WHAMMP3Q1A5X7 153 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 CERKLQ49MI3 558 aaPredicted RBP19.56■□□□□ 0.72
USH1C-205ENST00000527020 ZNF622Q969S3 477 aaKnown RBP eCLIP19.56■□□□□ 0.72
USH1C-205ENST00000527020 NDST4Q9H3R1 872 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 PCDHA12Q9UN75 941 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 ABCB11O95342 1321 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 SLC1A4P43007 532 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 FKBP1AP62942 108 aaKnown RBP19.56■□□□□ 0.72
USH1C-205ENST00000527020 CDK17Q00537 523 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 LRRC63Q05C16 580 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 COASYQ13057 564 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 FKBP15Q5T1M5 1219 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 STRIP1Q5VSL9 837 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 SLFN13Q68D06 897 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 TATDN1Q6P1N9 297 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 PCMTD1Q96MG8 357 aaPredicted RBP19.56■□□□□ 0.72
USH1C-205ENST00000527020 UIMC1Q96RL1 719 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 P2RX7Q99572 595 aaKnown RBP19.56■□□□□ 0.72
USH1C-205ENST00000527020 UBXN6Q9BZV1 441 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 LRRC27Q9C0I9 530 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 KANSL2Q9H9L4 492 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 PI4KBQ9UBF8 816 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 PCDHA1Q9Y5I3 950 aa19.56■□□□□ 0.72
USH1C-205ENST00000527020 EIF3CLB5ME19 914 aaKnown RBP19.55■□□□□ 0.72
USH1C-205ENST00000527020 SEPT2Q15019 361 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 TERF2Q15554 542 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 CDC37Q16543 378 aaPredicted RBP19.55■□□□□ 0.72
USH1C-205ENST00000527020 MAN2A1Q16706 1144 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 TRAPPC11Q7Z392 1133 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 CCDC170Q8IYT3 715 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 MSANTD4Q8NCY6 345 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 EIF3CQ99613 913 aaKnown RBP19.55■□□□□ 0.72
USH1C-205ENST00000527020 LACRTQ9GZZ8 138 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 KCNMB3Q9NPA1 279 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 MYO6Q9UM54 1294 aa19.55■□□□□ 0.72
USH1C-205ENST00000527020 MEIS2O14770 477 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 PLSCR1O15162 318 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 RAD21O60216 631 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 ECE2O60344 883 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 HMGB2P26583 209 aaKnown RBP19.54■□□□□ 0.72
USH1C-205ENST00000527020 HNRNPH3P31942 346 aaKnown RBP19.54■□□□□ 0.72
USH1C-205ENST00000527020 CYLC1P35663 651 aaPredicted RBP19.54■□□□□ 0.72
USH1C-205ENST00000527020 KRT83P78385 493 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 HDLBPQ00341 1268 aaKnown RBP19.54■□□□□ 0.72
USH1C-205ENST00000527020 ZCWPW2Q504Y3 356 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 CCDC122Q5T0U0 273 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 MSL1Q68DK7 614 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 FOXR2Q6PJQ5 311 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 CRYGNQ8WXF5 182 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 MBOAT7Q96N66 472 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 PNKPQ96T60 521 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 ANO3Q9BYT9 981 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 TMX4Q9H1E5 349 aaPredicted RBP19.54■□□□□ 0.72
USH1C-205ENST00000527020 ZNHIT6Q9NWK9 470 aaKnown RBP19.54■□□□□ 0.72
USH1C-205ENST00000527020 RAB21Q9UL25 225 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 CYP3A7-CYP3A51PA0A087WV96 503 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 CCDC151A5D8V7 595 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 ZNF263O14978 683 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 CYP3A7P24462 503 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 HOXA7P31268 230 aaPredicted RBP19.54■□□□□ 0.72
USH1C-205ENST00000527020 FUT8Q9BYC5 575 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 FGFBP2Q9BYJ0 223 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 ARFGAP3Q9NP61 516 aa19.54■□□□□ 0.72
USH1C-205ENST00000527020 SMCHD1A6NHR9 2005 aa19.53■□□□□ 0.72
USH1C-205ENST00000527020 E9PMD0 336 aa19.53■□□□□ 0.72
USH1C-205ENST00000527020 PLEKP08567 350 aaPredicted RBP19.53■□□□□ 0.72
USH1C-205ENST00000527020 USP11P51784 963 aa19.53■□□□□ 0.72
USH1C-205ENST00000527020 NCAPH2Q6IBW4 605 aa19.53■□□□□ 0.72
USH1C-205ENST00000527020 JAKMIP2Q96AA8 810 aa19.53■□□□□ 0.72
USH1C-205ENST00000527020 NAP1L4Q99733 375 aaKnown RBP19.53■□□□□ 0.72
USH1C-205ENST00000527020 GLT8D2Q9H1C3 349 aa19.53■□□□□ 0.72
USH1C-205ENST00000527020 KDM3AQ9Y4C1 1321 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms