RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ITGA7Q13683 1181 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 PGM5Q15124 567 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 PWP2Q15269 919 aaKnown RBP13.27□□□□□ -0.29
VCAN-212ENST00000515397 UBE2SQ16763 222 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 RTN1Q16799 776 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 ERICH6BQ5W0A0 696 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 BLOC1S2Q6QNY1 142 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 ANKRD33Q7Z3H0 272 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 HEATR3Q7Z4Q2 680 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 VSIG10LQ86VR7 867 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 AFG1LQ8WV93 481 aa13.27□□□□□ -0.29
VCAN-212ENST00000515397 MEIS2O14770 477 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 SMARCA1P28370 1054 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 PURAQ00577 322 aaKnown RBP13.26□□□□□ -0.29
VCAN-212ENST00000515397 SP2Q02086 613 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 GHRHRQ02643 423 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 C9orf50Q5SZB4 431 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 SMARCC2Q8TAQ2 1214 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 PPP1R12CQ9BZL4 782 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 DDX41Q9UJV9 622 aaKnown RBP13.26□□□□□ -0.29
VCAN-212ENST00000515397 MRVI1Q9Y6F6 885 aa13.26□□□□□ -0.29
VCAN-212ENST00000515397 KIAA0355O15063 1070 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 DTNBO60941 627 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 GH1P01241 217 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 HMGB1P09429 215 aaKnown RBP13.25□□□□□ -0.29
VCAN-212ENST00000515397 CCND2P30279 289 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 CPT1AP50416 773 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 CCT2P78371 535 aaKnown RBP13.25□□□□□ -0.29
VCAN-212ENST00000515397 ARHGAP1Q07960 439 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 FUT2Q10981 343 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 TRAF1Q13077 416 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 SHHQ15465 462 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 NBPF20Q3BBV1 942 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 FAM47CQ5HY64 1035 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 WWC2Q6AWC2 1192 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 TYW1BQ6NUM6 668 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 FAM126BQ8IXS8 530 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 TDHQ8IZJ6 230 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 SLC43A3Q8NBI5 491 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 TOX2Q96NM4 488 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 UPF3BQ9BZI7 483 aaKnown RBP13.25□□□□□ -0.29
VCAN-212ENST00000515397 PSTPIP2Q9H939 334 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 LRRC37A2A6NM11 1700 aa13.25□□□□□ -0.29
VCAN-212ENST00000515397 UMODL1Q5DID0 1318 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 CNTNAP5Q8WYK1 1306 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 A6NJR5 290 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 NKRFO15226 690 aaKnown RBP eCLIP13.24□□□□□ -0.29
VCAN-212ENST00000515397 B4GALT4O60513 344 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 CABYRO75952 493 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 CYP2C9P11712 490 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 CYP2C18P33260 490 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 METAP2P50579 478 aaKnown RBP eCLIP13.24□□□□□ -0.29
VCAN-212ENST00000515397 MRPS9P82933 396 aaKnown RBP13.24□□□□□ -0.29
VCAN-212ENST00000515397 CUL5Q93034 780 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 PGBD1Q96JS3 809 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 MTG1Q9BT17 334 aaPredicted RBP13.24□□□□□ -0.29
VCAN-212ENST00000515397 MAF1Q9H063 256 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 NCOA5Q9HCD5 579 aaKnown RBP13.24□□□□□ -0.29
VCAN-212ENST00000515397 TRMT13Q9NUP7 481 aaKnown RBP13.24□□□□□ -0.29
VCAN-212ENST00000515397 RBM28Q9NW13 759 aaKnown RBP13.24□□□□□ -0.29
VCAN-212ENST00000515397 MAP3K20Q9NYL2 800 aaKnown RBP13.24□□□□□ -0.29
VCAN-212ENST00000515397 TBX21Q9UL17 535 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 TELO2Q9Y4R8 837 aa13.24□□□□□ -0.29
VCAN-212ENST00000515397 ADAMTS3O15072 1205 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 GGPS1O95749 300 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 TIMP1P01033 207 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 CD4P01730 458 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 MMP3P08254 477 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 ACRP10323 421 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 PSMA5P28066 241 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 CCL23P55773 120 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 DHX37Q8IY37 1157 aaKnown RBP13.23□□□□□ -0.29
VCAN-212ENST00000515397 PHKBQ93100 1093 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 POLR3EQ9NVU0 708 aa13.23□□□□□ -0.29
VCAN-212ENST00000515397 TLR3O15455 904 aaKnown RBP13.22□□□□□ -0.29
VCAN-212ENST00000515397 SEC24BO95487 1268 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 ZNF286BP0CG31 522 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 CSF2RAP15509 400 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 NAPAP54920 295 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 SP4Q02446 784 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 SEMA3FQ13275 785 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 TOB2Q14106 344 aaPredicted RBP13.22□□□□□ -0.29
VCAN-212ENST00000515397 HSDL1Q3SXM5 330 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 BRDTQ58F21 947 aaPredicted RBP13.22□□□□□ -0.29
VCAN-212ENST00000515397 RUFY3Q7L099 469 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 Q7L0L9 218 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 SAMD3Q8N6K7 520 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 KAT2BQ92831 832 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 ALG1Q9BT22 464 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 ALDH8A1Q9H2A2 487 aaPredicted RBP13.22□□□□□ -0.29
VCAN-212ENST00000515397 ZSWIM6Q9HCJ5 1215 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 TMEM260Q9NX78 707 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 PKD2L1Q9P0L9 805 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 PCDHA6Q9UN73 950 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 PCDHA8Q9Y5H6 950 aa13.22□□□□□ -0.29
VCAN-212ENST00000515397 MROH7Q68CQ1 1323 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 A0A1W2PPC1 479 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 STXBP3O00186 592 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 PIK3CDO00329 1044 aa13.21□□□□□ -0.29
VCAN-212ENST00000515397 UBA1P22314 1058 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms