RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 RIOX2Q8IUF8 465 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 CKAP2LQ8IYA6 745 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 TMTC2Q8N394 836 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 CYP2W1Q8TAV3 490 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 COL20A1Q9P218 1284 aa8.96□□□□□ -0.97
LIMCH1-219ENST00000514096 SMCO2A6NFE2 343 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 SLC15A5A6NIM6 579 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 UNCXA6NJT0 531 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 PPP1R11O60927 126 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 LARGE1O95461 756 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 CTSHP09668 335 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 TMEM62Q0P6H9 643 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 TROAPQ12815 778 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 KCTD17Q8N5Z5 321 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 C12orf42Q96LP6 360 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 STARD7Q9NQZ5 370 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 CYP39A1Q9NYL5 469 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 IGKV6D-41A0A0C4DH26 115 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 GCOM1H8Y6P7 765 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 PES1O00541 588 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 ICAM1P05362 532 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 POLR2MP0CAP2 368 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 ACRP10323 421 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 CYP2C9P11712 490 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 CAPN2P17655 700 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 SEC23AQ15436 765 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 FERMT3Q86UX7 667 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 ZNF536O15090 1300 aa8.96□□□□□ -0.98
LIMCH1-219ENST00000514096 DOCK2Q92608 1830 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 BACH1O14867 736 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 ZBTB5O15062 677 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 GJB1P08034 283 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 KCNA10Q16322 511 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 ASPRV1Q53RT3 343 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 FAM184AQ8NB25 1140 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 OR6J1Q8NGC5 347 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 SGSM3Q96HU1 749 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 TTC14Q96N46 770 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 MORF4L1Q9UBU8 362 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 MTUS1Q9ULD2 1270 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 TELO2Q9Y4R8 837 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 NCOR1O75376 2440 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 ADCY6O43306 1168 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 STRNO43815 780 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 RPS6KB1P23443 525 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 SLC35G1Q2M3R5 365 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 CYFIP1Q7L576 1253 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 RPAINQ86UA6 219 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 GMCL1P1Q8NEA9 526 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 AFG1LQ8WV93 481 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 GLG1Q92896 1179 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 GMCL1Q96IK5 515 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 POLD4Q9HCU8 107 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 MRPL11Q9Y3B7 192 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 MCM3APO60318 1980 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 NAV1Q8NEY1 1877 aa8.95□□□□□ -0.98
LIMCH1-219ENST00000514096 TTC36A6NLP5 189 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 ADAMTS3O15072 1205 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 KRT32Q14532 448 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 PPP2R5BQ15173 497 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 CPLX2Q6PUV4 134 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 TLK2Q86UE8 772 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 TRIM22Q8IYM9 498 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 MKL1Q969V6 931 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 DDX20Q9UHI6 824 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 SNAI1O95863 264 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 ASGR1P07306 291 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 NR3C2P08235 984 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 HSPA4P34932 840 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 GYS2P54840 703 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 GRB14Q14449 540 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 TRIM60Q495X7 471 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 LONRF3Q496Y0 759 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 NOM1Q5C9Z4 860 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 SASS6Q6UVJ0 657 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 ARL10Q8N8L6 244 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 GLT1D1Q96MS3 346 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 NCAPGQ9BPX3 1015 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 CERS4Q9HA82 394 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 ADD3Q9UEY8 706 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 LIG1P18858 919 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 TLE2Q04725 743 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 NBPF20Q3BBV1 942 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 RUFY3Q7L099 469 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 RNF180Q86T96 592 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 MICALL1Q8N3F8 863 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 TMEM87BQ96K49 555 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 LBHD1Q9BQE6 289 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 FAM49AQ9H0Q0 323 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 ORC3Q9UBD5 711 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 FBXO40Q9UH90 709 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 FAM184BQ9ULE4 1060 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 TPCN1Q9ULQ1 816 aa8.94□□□□□ -0.98
LIMCH1-219ENST00000514096 VPS37CA5D8V6 355 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 GGPS1O95749 300 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 RAG1P15918 1043 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 NASPP49321 788 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 WWC2Q6AWC2 1192 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 TYW1BQ6NUM6 668 aa8.93□□□□□ -0.98
LIMCH1-219ENST00000514096 SH3RF1Q7Z6J0 888 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms