RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 EXOC1Q9NV70 894 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 STIM2Q9P246 746 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 TARSL2A2RTX5 802 aaKnown RBP10.66□□□□□ -0.7
VCAN-210ENST00000513960 TOM1O60784 492 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 RASSF7Q02833 373 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 IFFO1Q0D2I5 559 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 RRAGAQ7L523 313 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 TMC4Q7Z404 712 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 TRIM58Q8NG06 486 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 RASGRP4Q8TDF6 673 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 NLRC4Q9NPP4 1024 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 LEMD3Q9Y2U8 911 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 HYOU1Q9Y4L1 999 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 GTPBP6O43824 516 aaPredicted RBP10.66□□□□□ -0.7
VCAN-210ENST00000513960 LSP1P33241 339 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 NT5C2P49902 561 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 TTMPQ5BVD1 217 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 ZNF473Q8WTR7 871 aaKnown RBP10.66□□□□□ -0.7
VCAN-210ENST00000513960 TGFBRAP1Q8WUH2 860 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 GOPCQ9HD26 462 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 LIMA1Q9UHB6 759 aaKnown RBP10.66□□□□□ -0.7
VCAN-210ENST00000513960 PCDHA4Q9UN74 947 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 CAPN6Q9Y6Q1 641 aa10.66□□□□□ -0.7
VCAN-210ENST00000513960 PP2D1A8MPX8 630 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 TMCO5BA8MYB1 307 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 FTCDO95954 541 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 CPP00450 1065 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 LONP1P36776 959 aaKnown RBP10.65□□□□□ -0.7
VCAN-210ENST00000513960 DIXDC1Q155Q3 683 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 SNCBQ16143 134 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 TRAPPC3LQ5T215 181 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 NAA35Q5VZE5 725 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 ARL6IP4Q66PJ3 421 aaKnown RBP10.65□□□□□ -0.7
VCAN-210ENST00000513960 RCSD1Q6JBY9 416 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 DTHD1Q6ZMT9 781 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 APTXQ7Z2E3 356 aaKnown RBP10.65□□□□□ -0.7
VCAN-210ENST00000513960 HEATR3Q7Z4Q2 680 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 SH3RF3Q8TEJ3 882 aaPredicted RBP10.65□□□□□ -0.7
VCAN-210ENST00000513960 TRIM31Q9BZY9 425 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 H7C1D1 291 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 VEGFAP15692 232 aaPredicted RBP10.65□□□□□ -0.7
VCAN-210ENST00000513960 ELF1P32519 619 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 CARSP49589 748 aaKnown RBP10.65□□□□□ -0.7
VCAN-210ENST00000513960 PDE4DQ08499 809 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 PAK2Q13177 524 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 VPS72Q15906 364 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 NLRP14Q86W24 1093 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 CNBD1Q8NA66 436 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 OR2W6PQ8NHA6 318 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 SH3GLB2Q9NR46 395 aa10.65□□□□□ -0.7
VCAN-210ENST00000513960 PACSIN2Q9UNF0 486 aaPredicted RBP10.65□□□□□ -0.7
VCAN-210ENST00000513960 USP17L3A6NCW0 530 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 USP17L4A6NCW7 530 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 PDHBP11177 359 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 GRAPQ13588 217 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 SWT1Q5T5J6 900 aaKnown RBP10.65□□□□□ -0.71
VCAN-210ENST00000513960 ZNF658Q5TYW1 1059 aaPredicted RBP10.65□□□□□ -0.71
VCAN-210ENST00000513960 LRCH2Q5VUJ6 765 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 USP17L1Q7RTZ2 530 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 STAG2Q8N3U4 1231 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 GRAPLQ8TC17 118 aaPredicted RBP10.65□□□□□ -0.71
VCAN-210ENST00000513960 CCT8L2Q96SF2 557 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 OSBPL9Q96SU4 736 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 HAUS2Q9NVX0 235 aa10.65□□□□□ -0.71
VCAN-210ENST00000513960 TLDC2A0PJX2 215 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 EIF4E1BA6NMX2 242 aaKnown RBP10.64□□□□□ -0.71
VCAN-210ENST00000513960 LGALS16A8MUM7 142 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 EIF4A3P38919 411 aaKnown RBP10.64□□□□□ -0.71
VCAN-210ENST00000513960 PBX1P40424 430 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 DNM2P50570 870 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 FAM182BQ5T319 152 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 MAPKAPK5Q8IW41 473 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 RPGRQ92834 1020 aaKnown RBP10.64□□□□□ -0.71
VCAN-210ENST00000513960 CNOT6LQ96LI5 555 aaKnown RBP10.64□□□□□ -0.71
VCAN-210ENST00000513960 RBM12Q9NTZ6 932 aaKnown RBP10.64□□□□□ -0.71
VCAN-210ENST00000513960 SAP30BPQ9UHR5 308 aaKnown RBP10.64□□□□□ -0.71
VCAN-210ENST00000513960 NRAPQ86VF7 1730 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 XDHP47989 1333 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 ITIH6Q6UXX5 1313 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 SKAP2O75563 359 aaPredicted RBP10.64□□□□□ -0.71
VCAN-210ENST00000513960 SELENOSQ9BQE4 189 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 TSGA10Q9BZW7 698 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 IL17RBQ9NRM6 502 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 DONSONQ9NYP3 566 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 SNX12Q9UMY4 172 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 TM4SF1P30408 202 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 GRM4Q14833 912 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 PPP1R7Q15435 360 aa10.64□□□□□ -0.71
VCAN-210ENST00000513960 BUB1BO60566 1050 aaPredicted RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 PPP1R37O75864 691 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 PMS1P54277 932 aaKnown RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 CFAP221Q4G0U5 840 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 PAPD7Q5XG87 772 aaKnown RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 CCDC13Q8IYE1 715 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 TACO1Q9BSH4 297 aaKnown RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 SLC40A1Q9NP59 571 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 PCDHA13Q9Y5I0 950 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 A0A1B0GUA9 196 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 GCOM1H8Y6P7 765 aaPredicted RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 MYZAPP0CAP1 466 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms