RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 VSIG10LQ86VR7 867 aa16.07■□□□□ 0.16
DDX41-212ENST00000511040 Q9Y3F1 56 aa16.07■□□□□ 0.16
DDX41-212ENST00000511040 KIAA1217Q5T5P2 1943 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 FRMPD4Q14CM0 1322 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 PRPF3O43395 683 aaKnown RBP16.06■□□□□ 0.16
DDX41-212ENST00000511040 PQBP1O60828 265 aaKnown RBP16.06■□□□□ 0.16
DDX41-212ENST00000511040 DTNBO60941 627 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 RGS20O76081 388 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 MYL3P08590 195 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 SCG2P13521 617 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 ADCY7P51828 1080 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 AK2P54819 239 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 AKAP17AQ02040 695 aaKnown RBP16.06■□□□□ 0.16
DDX41-212ENST00000511040 SNX17Q15036 470 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 PFKFB3Q16875 520 aaPredicted RBP16.06■□□□□ 0.16
DDX41-212ENST00000511040 ZNF274Q96GC6 653 aaPredicted RBP16.06■□□□□ 0.16
DDX41-212ENST00000511040 GLT1D1Q96MS3 346 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 BARHL2Q9NY43 387 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 RTEL1Q9NZ71 1219 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 TPCN1Q9ULQ1 816 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 MRVI1Q9Y6F6 885 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 DNAH12Q6ZR08 3092 aa16.06■□□□□ 0.16
DDX41-212ENST00000511040 SMCO2A6NFE2 343 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 NKRFO15226 690 aaKnown RBP eCLIP16.05■□□□□ 0.16
DDX41-212ENST00000511040 ZEB2O60315 1214 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 PSMC6P62333 389 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 MRPS9P82933 396 aaKnown RBP16.05■□□□□ 0.16
DDX41-212ENST00000511040 TLE2Q04725 743 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 PKN1Q16512 942 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 PPP1R18Q6NYC8 613 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 PGBD1Q96JS3 809 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 RIC8AQ9NPQ8 531 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 PRDM5Q9NQX1 630 aaPredicted RBP16.05■□□□□ 0.16
DDX41-212ENST00000511040 TMEM260Q9NX78 707 aa16.05■□□□□ 0.16
DDX41-212ENST00000511040 DDX41Q9UJV9 622 aaKnown RBP16.05■□□□□ 0.16
DDX41-212ENST00000511040 SPDYE3A6NKU9 549 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 CPLX1O14810 134 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 ADAMTS3O15072 1205 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 GH1P01241 217 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 IFNAR1P17181 557 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 CPT1AP50416 773 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 NEK4P51957 841 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 ARHGAP1Q07960 439 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 CHRDL2Q6WN34 429 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 PPP1R13LQ8WUF5 828 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 AFG1LQ8WV93 481 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 IL17RAQ96F46 866 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 PCDHA6Q9UN73 950 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 COLQQ9Y215 455 aaPredicted RBP16.04■□□□□ 0.16
DDX41-212ENST00000511040 PCDHA8Q9Y5H6 950 aa16.04■□□□□ 0.16
DDX41-212ENST00000511040 ELP1O95163 1332 aa16.03■□□□□ 0.16
DDX41-212ENST00000511040 SP2Q02086 613 aa16.03■□□□□ 0.16
DDX41-212ENST00000511040 SSRP1Q08945 709 aaKnown RBP16.03■□□□□ 0.16
DDX41-212ENST00000511040 SCRN1Q12765 414 aa16.03■□□□□ 0.16
DDX41-212ENST00000511040 SH3RF1Q7Z6J0 888 aa16.03■□□□□ 0.16
DDX41-212ENST00000511040 RNF26Q9BY78 433 aaPredicted RBP16.03■□□□□ 0.16
DDX41-212ENST00000511040 ALDH8A1Q9H2A2 487 aaPredicted RBP16.03■□□□□ 0.16
DDX41-212ENST00000511040 SLKQ9H2G2 1235 aaPredicted RBP16.03■□□□□ 0.16
DDX41-212ENST00000511040 GTF3C3Q9Y5Q9 886 aa16.03■□□□□ 0.16
DDX41-212ENST00000511040 CEP290O15078 2479 aa16.03■□□□□ 0.16
DDX41-212ENST00000511040 GRIN2DO15399 1336 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 A0A0U1RQG5 324 aaPredicted RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 hCG_1984214I3L0E3 225 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 ARVCFO00192 962 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 MAGEA10P43363 369 aaPredicted RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 CHMP4BP1P59074 171 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 PURAQ00577 322 aaKnown RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 MDM2Q00987 491 aaPredicted RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 BRDTQ58F21 947 aaPredicted RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 C1orf53Q5VUE5 145 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 JAKMIP3Q5VZ66 844 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 PCNX4Q63HM2 1172 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 DHX37Q8IY37 1157 aaKnown RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 TRIM22Q8IYM9 498 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 ZNF713Q8N859 430 aaPredicted RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 NECAB1Q8N987 351 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 BCAS3Q9H6U6 928 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 PDLIM7Q9NR12 457 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 VPS54Q9P1Q0 977 aa16.02■□□□□ 0.16
DDX41-212ENST00000511040 RBM27Q9P2N5 1060 aaKnown RBP16.02■□□□□ 0.16
DDX41-212ENST00000511040 TRIM43BA6NCK2 446 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 A6NJR5 290 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 PFKFB2O60825 505 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 CABYRO75952 493 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 LARGE1O95461 756 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 GGPS1O95749 300 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 UBA1P22314 1058 aaKnown RBP16.01■□□□□ 0.15
DDX41-212ENST00000511040 CDK7P50613 346 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 SEMA3FQ13275 785 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 ITGA7Q13683 1181 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 ANKRD1Q15327 319 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 GNPTABQ3T906 1256 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 TRIM43Q96BQ3 446 aaPredicted RBP16.01■□□□□ 0.15
DDX41-212ENST00000511040 AIFM3Q96NN9 605 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 INPP4AQ96PE3 977 aaPredicted RBP16.01■□□□□ 0.15
DDX41-212ENST00000511040 MTG1Q9BT17 334 aaPredicted RBP16.01■□□□□ 0.15
DDX41-212ENST00000511040 ANO3Q9BYT9 981 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 C22orf23Q9BZE7 217 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 POLR3EQ9NVU0 708 aa16.01■□□□□ 0.15
DDX41-212ENST00000511040 PRKAG2Q9UGJ0 569 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms