RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 TAF1P21675 1872 aa12.77□□□□□ -0.36
RFC4-214ENST00000494047 GPR75-ASB3A0A0A6YYF3 556 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 SSU72P8A0A1W2PR75 194 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 PPIP5K2O43314 1243 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 LCA5LO95447 670 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 FLT1P17948 1338 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 PLCG1P19174 1290 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 USP14P54578 494 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 IL17AQ16552 155 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 INF2Q27J81 1249 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 GLE1Q53GS7 698 aaKnown RBP12.77□□□□□ -0.37
RFC4-214ENST00000494047 PPP4R3AQ6IN85 833 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 CENPPQ6IPU0 288 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 NIM1KQ8IY84 436 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 ACRBPQ8NEB7 543 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 CCDC42Q96M95 316 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 EYA3Q99504 573 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 SLF1Q9BQI6 1058 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 TMEM47Q9BQJ4 181 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 ANKIB1Q9P2G1 1089 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 STX8Q9UNK0 236 aa12.77□□□□□ -0.37
RFC4-214ENST00000494047 FAM205AQ6ZU69 1335 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 SMCO2A6NFE2 343 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 TULP1O00294 542 aaPredicted RBP12.76□□□□□ -0.37
RFC4-214ENST00000494047 PES1O00541 588 aaKnown RBP12.76□□□□□ -0.37
RFC4-214ENST00000494047 CCNT1O60563 726 aaKnown RBP12.76□□□□□ -0.37
RFC4-214ENST00000494047 DDNO94850 711 aaPredicted RBP12.76□□□□□ -0.37
RFC4-214ENST00000494047 RASA1P20936 1047 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 APBA1Q02410 837 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 CASP8Q14790 479 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 GPATCH4Q5T3I0 446 aaKnown RBP12.76□□□□□ -0.37
RFC4-214ENST00000494047 KRT79Q5XKE5 535 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 SMC1BQ8NDV3 1235 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 CAGE1Q8TC20 777 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 LARP4BQ92615 738 aaKnown RBP12.76□□□□□ -0.37
RFC4-214ENST00000494047 CEP63Q96MT8 703 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 RIOX1Q9H6W3 641 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 IL17RBQ9NRM6 502 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 PODXL2Q9NZ53 605 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 FAM184BQ9ULE4 1060 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 GUCA1BQ9UMX6 200 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 GDAQ9Y2T3 454 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 DAAM1Q9Y4D1 1078 aa12.76□□□□□ -0.37
RFC4-214ENST00000494047 GAKO14976 1311 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 hCG_1642624A0A1W2PR95 340 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 SASH3O75995 380 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 SEC31AO94979 1220 aaKnown RBP12.75□□□□□ -0.37
RFC4-214ENST00000494047 IL1R1P14778 569 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 HSPA6P17066 643 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 TNFRSF8P28908 595 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 ACTN2P35609 894 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 ADCY7P51828 1080 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 TRAF1Q13077 416 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 CALCRLQ16602 461 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 VWA3BQ502W6 1294 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 C10orf76Q5T2E6 689 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 MOXD1Q6UVY6 613 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 GBP6Q6ZN66 633 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 IRF2BP1Q8IU81 584 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 GPKOWQ92917 476 aaPredicted RBP eCLIP12.75□□□□□ -0.377e-6■■■■■ 33.4
RFC4-214ENST00000494047 PCMTD1Q96MG8 357 aaPredicted RBP12.75□□□□□ -0.37
RFC4-214ENST00000494047 CRACR2AQ9BSW2 395 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 DEF6Q9H4E7 631 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 NHEJ1Q9H9Q4 299 aaPredicted RBP12.75□□□□□ -0.37
RFC4-214ENST00000494047 PUF60Q9UHX1 559 aaKnown RBP12.75□□□□□ -0.37
RFC4-214ENST00000494047 ADAM21Q9UKJ8 722 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 ZNRF3Q9ULT6 936 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 COL4A1P02462 1669 aa12.75□□□□□ -0.37
RFC4-214ENST00000494047 ATAD5Q96QE3 1844 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 POTECB2RU33 542 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 WNT7AO00755 349 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 PJA2O43164 708 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 NMT2O60551 498 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 USP17L8P0C7I0 530 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 MAPK8IP2Q13387 824 aaPredicted RBP12.74□□□□□ -0.37
RFC4-214ENST00000494047 NNTQ13423 1086 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 IFI16Q16666 785 aaKnown RBP12.74□□□□□ -0.37
RFC4-214ENST00000494047 AOC3Q16853 763 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 TEX11Q8IYF3 940 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 MMGT1Q8N4V1 131 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 LRWD1Q9UFC0 647 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 HYOU1Q9Y4L1 999 aa12.74□□□□□ -0.37
RFC4-214ENST00000494047 ZNF541Q9H0D2 1346 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 B4DLN1 442 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 CES2O00748 559 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 IDEP14735 1019 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 CASP1P29466 404 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 PAFAH1B1P43034 410 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 CDK8P49336 464 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 MRPL12P52815 198 aaKnown RBP12.73□□□□□ -0.37
RFC4-214ENST00000494047 MARSP56192 900 aaKnown RBP12.73□□□□□ -0.37
RFC4-214ENST00000494047 TNIP1Q15025 636 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 ZSCAN26Q16670 478 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 LETM2Q2VYF4 491 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 EMBQ6PCB8 327 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 PNMA8AQ86V59 439 aaPredicted RBP12.73□□□□□ -0.37
RFC4-214ENST00000494047 EIF1ADQ8N9N8 165 aaKnown RBP12.73□□□□□ -0.37
RFC4-214ENST00000494047 NEK11Q8NG66 645 aa12.73□□□□□ -0.37
RFC4-214ENST00000494047 SH3RF3Q8TEJ3 882 aaPredicted RBP12.73□□□□□ -0.37
RFC4-214ENST00000494047 IFIH1Q9BYX4 1025 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms