RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 TCIRG1Q13488 830 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 NLRP10Q86W26 655 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 PLD6Q8N2A8 252 aaKnown RBP7.86□□□□□ -1.15
VPS50-215ENST00000480943 C8orf58Q8NAV2 365 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 PLBD2Q8NHP8 589 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 TSR2Q969E8 191 aaKnown RBP7.86□□□□□ -1.15
VPS50-215ENST00000480943 RBM17Q96I25 401 aaKnown RBP7.86□□□□□ -1.15
VPS50-215ENST00000480943 HRASLS5Q96KN8 279 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 TMPRSS5Q9H3S3 457 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 PHAXQ9H814 394 aaKnown RBP7.86□□□□□ -1.15
VPS50-215ENST00000480943 ZNF277Q9NRM2 450 aaPredicted RBP7.86□□□□□ -1.15
VPS50-215ENST00000480943 HYPKQ9NX55 129 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 FAM8A1Q9UBU6 413 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 SAMM50Q9Y512 469 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 PCDHGC5Q9Y5F6 944 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 A0A1B0GUL6 1792 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 ADAMTSL1Q8N6G6 1762 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 LTBP1Q14766 1721 aa7.86□□□□□ -1.15
VPS50-215ENST00000480943 TRPM7Q96QT4 1865 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 PSME4Q14997 1843 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 DUOX1Q9NRD9 1551 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 SH3TC1Q8TE82 1336 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 ENC1O14682 589 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 DYNC1LI2O43237 492 aaPredicted RBP7.85□□□□□ -1.15
VPS50-215ENST00000480943 KRT1P04264 644 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 USP17L7P0C7H9 530 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 HCLS1P14317 486 aaPredicted RBP7.85□□□□□ -1.15
VPS50-215ENST00000480943 RTKN2Q8IZC4 609 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 SYNE4Q8N205 404 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 CRAMP1Q96RY5 1269 aa7.85□□□□□ -1.15
VPS50-215ENST00000480943 TRMT112Q9UI30 125 aaKnown RBP7.85□□□□□ -1.15
VPS50-215ENST00000480943 ABCC4O15439 1325 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 ZNF541Q9H0D2 1346 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.84□□□□□ -1.15
VPS50-215ENST00000480943 DDNO94850 711 aaPredicted RBP7.84□□□□□ -1.15
VPS50-215ENST00000480943 GLI1P08151 1106 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 VEGFAP15692 232 aaPredicted RBP7.84□□□□□ -1.15
VPS50-215ENST00000480943 IARSP41252 1262 aaKnown RBP7.84□□□□□ -1.15
VPS50-215ENST00000480943 ZNF252P-AS1Q0IIN9 211 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 IFI16Q16666 785 aaKnown RBP7.84□□□□□ -1.15
VPS50-215ENST00000480943 AOC3Q16853 763 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 CCDC27Q2M243 656 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 SLC10A5Q5PT55 438 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 SEZ6L2Q6UXD5 910 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 PRR23BQ6ZRT6 265 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 FAM9BQ8IZU0 186 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 TSPYL6Q8N831 410 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 GPBAR1Q8TDU6 330 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 FRMD6Q96NE9 622 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 ISCA1Q9BUE6 129 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 PARD6AQ9NPB6 346 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 DISC1Q9NRI5 854 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 C1GALT1Q9NS00 363 aa7.84□□□□□ -1.15
VPS50-215ENST00000480943 TCAF2A6NFQ2 919 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 RNGTTO60942 597 aaKnown RBP7.83□□□□□ -1.16
VPS50-215ENST00000480943 PRPF40AO75400 957 aaKnown RBP7.83□□□□□ -1.16
VPS50-215ENST00000480943 PAGE1O75459 146 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 FSTL1Q12841 308 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 TTLL4Q14679 1199 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 CCDC30Q5VVM6 783 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 SMYD4Q8IYR2 804 aaPredicted RBP7.83□□□□□ -1.16
VPS50-215ENST00000480943 SMC1BQ8NDV3 1235 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 FAM89AQ96GI7 184 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 PSMD1Q99460 953 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 MYD88Q99836 296 aa7.83□□□□□ -1.16
VPS50-215ENST00000480943 SCN9AQ15858 1988 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 IL16Q14005 1332 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 FANCIQ9NVI1 1328 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 ANKRD33BA6NCL7 494 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 DDX58O95786 925 aaKnown RBP7.82□□□□□ -1.16
VPS50-215ENST00000480943 GNA15P30679 374 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 FGD1P98174 961 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 GRAPQ13588 217 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 TWISTNBQ3B726 338 aaPredicted RBP7.82□□□□□ -1.16
VPS50-215ENST00000480943 DDX46Q7L014 1031 aaKnown RBP7.82□□□□□ -1.16
VPS50-215ENST00000480943 GRAPLQ8TC17 118 aaPredicted RBP7.82□□□□□ -1.16
VPS50-215ENST00000480943 JDP2Q8WYK2 163 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 STK31Q9BXU1 1019 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 TMX4Q9H1E5 349 aaPredicted RBP7.82□□□□□ -1.16
VPS50-215ENST00000480943 MKNK2Q9HBH9 465 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 CD320Q9NPF0 282 aa7.82□□□□□ -1.16
VPS50-215ENST00000480943 POLR2AP24928 1970 aaKnown RBP7.82□□□□□ -1.16
VPS50-215ENST00000480943 ZNF646O15015 1829 aaPredicted RBP7.81□□□□□ -1.16
VPS50-215ENST00000480943 TMEM265A0A087WTH1 108 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 IRS4O14654 1257 aaPredicted RBP7.81□□□□□ -1.16
VPS50-215ENST00000480943 PPIP5K2O43314 1243 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 BMP6P22004 513 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 EIF4BP23588 611 aaKnown RBP7.81□□□□□ -1.16
VPS50-215ENST00000480943 ERVK-24P63145 666 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 HTRA3P83110 453 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 EAPPQ56P03 285 aaPredicted RBP7.81□□□□□ -1.16
VPS50-215ENST00000480943 ZC3H12AQ5D1E8 599 aaKnown RBP7.81□□□□□ -1.16
VPS50-215ENST00000480943 LLGL2Q6P1M3 1020 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 GRIN3AQ8TCU5 1115 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 CHMP4AQ9BY43 222 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 TTF2Q9UNY4 1162 aaKnown RBP7.81□□□□□ -1.16
VPS50-215ENST00000480943 ATP6V0A2Q9Y487 856 aa7.81□□□□□ -1.16
VPS50-215ENST00000480943 IQCA1LA6NCM1 817 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 FZD9O00144 591 aa7.8□□□□□ -1.16
VPS50-215ENST00000480943 NUAK1O60285 661 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms