RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CREB3L3Q68CJ9 461 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 OTOP2Q7RTS6 562 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 CATIPQ7Z7H3 387 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 FCHSD1Q86WN1 690 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 ZNF654Q8IZM8 581 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 KAT2BQ92831 832 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 BCAS3Q9H6U6 928 aa19.35■□□□□ 0.69
USP40-212ENST00000473191 PNMA6FA0A0J9YX94 578 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 B4DLN1 442 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 SH2B2O14492 632 aaPredicted RBP19.34■□□□□ 0.69
USP40-212ENST00000473191 GH1P01241 217 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 MRPL12P52815 198 aaKnown RBP19.34■□□□□ 0.69
USP40-212ENST00000473191 SP2Q02086 613 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 SART3Q15020 963 aaKnown RBP19.34■□□□□ 0.69
USP40-212ENST00000473191 PGM5Q15124 567 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 CTAGE1Q96RT6 745 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 PBX4Q9BYU1 374 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 MAF1Q9H063 256 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 ANO2Q9NQ90 1003 aa19.34■□□□□ 0.69
USP40-212ENST00000473191 EIF3JO75822 258 aaKnown RBP19.33■□□□□ 0.68
USP40-212ENST00000473191 GRIN2CQ14957 1233 aa19.33■□□□□ 0.68
USP40-212ENST00000473191 SRBD1Q8N5C6 995 aaKnown RBP19.33■□□□□ 0.68
USP40-212ENST00000473191 HERVK_113Q902F9 699 aa19.33■□□□□ 0.68
USP40-212ENST00000473191 MRVI1Q9Y6F6 885 aa19.33■□□□□ 0.68
USP40-212ENST00000473191 GBF1Q92538 1859 aa19.33■□□□□ 0.68
USP40-212ENST00000473191 UNC80Q8N2C7 3258 aa19.33■□□□□ 0.68
USP40-212ENST00000473191 MYH7BA7E2Y1 1941 aa19.32■□□□□ 0.68
USP40-212ENST00000473191 hCG_1642624A0A1W2PR95 340 aa19.32■□□□□ 0.68
USP40-212ENST00000473191 GDF6Q6KF10 455 aaPredicted RBP19.32■□□□□ 0.68
USP40-212ENST00000473191 NFRKBQ6P4R8 1299 aa19.32■□□□□ 0.68
USP40-212ENST00000473191 PSRC1Q6PGN9 363 aaPredicted RBP19.32■□□□□ 0.68
USP40-212ENST00000473191 CENPQQ7L2Z9 268 aaPredicted RBP19.32■□□□□ 0.68
USP40-212ENST00000473191 DEFB128Q7Z7B8 93 aa19.32■□□□□ 0.68
USP40-212ENST00000473191 VSIG10LQ86VR7 867 aa19.32■□□□□ 0.68
USP40-212ENST00000473191 GCOM1H8Y6P7 765 aaPredicted RBP19.31■□□□□ 0.68
USP40-212ENST00000473191 FGBP02675 491 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 POLR2MP0CAP2 368 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 ZNF286BP0CG31 522 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 BRDTQ58F21 947 aaPredicted RBP19.31■□□□□ 0.68
USP40-212ENST00000473191 BMP2KLQ5H9B9 411 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 CASC1Q6TDU7 716 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 TIFAQ96CG3 184 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 TCEANC2Q96MN5 208 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 SEZ6LQ9BYH1 1024 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 TELO2Q9Y4R8 837 aa19.31■□□□□ 0.68
USP40-212ENST00000473191 KPNA6O60684 536 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 DDAH1O94760 285 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 MCM5P33992 734 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 RABGGTBP53611 331 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 MRPS9P82933 396 aaKnown RBP19.3■□□□□ 0.68
USP40-212ENST00000473191 HIC1Q14526 733 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 HSDL1Q3SXM5 330 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 USP17L6PQ6QN14 398 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 RASEFQ8IZ41 740 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 ZNF576Q9H609 170 aa19.3■□□□□ 0.68
USP40-212ENST00000473191 YBX2Q9Y2T7 364 aaKnown RBP19.3■□□□□ 0.68
USP40-212ENST00000473191 TANC1Q9C0D5 1861 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 SUPT20HL2P0C7V6 817 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 MYOGP15173 224 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 UBA1P22314 1058 aaKnown RBP19.29■□□□□ 0.68
USP40-212ENST00000473191 ADCK5Q3MIX3 580 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 MYSM1Q5VVJ2 828 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 NFXL1Q6ZNB6 911 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 DHX37Q8IY37 1157 aaKnown RBP19.29■□□□□ 0.68
USP40-212ENST00000473191 CCDC82Q8N4S0 544 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 CTCFLQ8NI51 663 aaPredicted RBP19.29■□□□□ 0.68
USP40-212ENST00000473191 DHX38Q92620 1227 aaKnown RBP19.29■□□□□ 0.68
USP40-212ENST00000473191 EMID1Q96A84 441 aaPredicted RBP19.29■□□□□ 0.68
USP40-212ENST00000473191 ALG1Q9BT22 464 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 SPZ1Q9BXG8 430 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 MAP3K20Q9NYL2 800 aaKnown RBP19.29■□□□□ 0.68
USP40-212ENST00000473191 RTEL1Q9NZ71 1219 aa19.29■□□□□ 0.68
USP40-212ENST00000473191 DOCK5Q9H7D0 1870 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 PRUNE2Q8WUY3 3088 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 CCDC69A6NI79 296 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 MEIS2O14770 477 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 GGPS1O95749 300 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 IQCF3P0C7M6 154 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 CASTP20810 708 aaKnown RBP19.28■□□□□ 0.68
USP40-212ENST00000473191 ZNF200P98182 395 aaPredicted RBP19.28■□□□□ 0.68
USP40-212ENST00000473191 SEMA3FQ13275 785 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 GPNMBQ14956 572 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 PTGISQ16647 500 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 CELF3Q5SZQ8 465 aaKnown RBP19.28■□□□□ 0.68
USP40-212ENST00000473191 PPTC7Q8NI37 304 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 WNT8BQ93098 351 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 TMEM87BQ96K49 555 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 MAP3K14Q99558 947 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 HDAC6Q9UBN7 1215 aa19.28■□□□□ 0.68
USP40-212ENST00000473191 FRMPD4Q14CM0 1322 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 TRIP12Q14669 1992 aaPredicted RBP19.27■□□□□ 0.68
USP40-212ENST00000473191 FOSL2P15408 326 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 CCND2P30279 289 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 LIFRP42702 1097 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 PSEN2P49810 448 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 PTPN11Q06124 597 aaPredicted RBP19.27■□□□□ 0.68
USP40-212ENST00000473191 LAMC2Q13753 1193 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 DGKDQ16760 1214 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 SAMD3Q8N6K7 520 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 MAFAQ8NHW3 353 aaPredicted RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms