RNA–Protein interactions for RNA: ENST00000462817.5

LIMS1-211, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-211ENST00000462817 KCNV1Q6PIU1 500 aa17.9■□□□□ 0.46
LIMS1-211ENST00000462817 DHX37Q8IY37 1157 aaKnown RBP17.9■□□□□ 0.46
LIMS1-211ENST00000462817 RASEFQ8IZ41 740 aa17.9■□□□□ 0.46
LIMS1-211ENST00000462817 SLC43A3Q8NBI5 491 aa17.9■□□□□ 0.46
LIMS1-211ENST00000462817 RBM28Q9NW13 759 aaKnown RBP17.9■□□□□ 0.46
LIMS1-211ENST00000462817 ZBTB43O43298 467 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 CD4P01730 458 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 SUPT20HL2P0C7V6 817 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 CASTP20810 708 aaKnown RBP17.89■□□□□ 0.45
LIMS1-211ENST00000462817 EXOSC10Q01780 885 aaKnown RBP17.89■□□□□ 0.45
LIMS1-211ENST00000462817 PPIGQ13427 754 aaKnown RBP eCLIP17.89■□□□□ 0.45
LIMS1-211ENST00000462817 C9orf50Q5SZB4 431 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 CCDC62Q6P9F0 684 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 VSIG10LQ86VR7 867 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 AFG1LQ8WV93 481 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 RNPC3Q96LT9 517 aaKnown RBP17.89■□□□□ 0.45
LIMS1-211ENST00000462817 HIPK3Q9H422 1215 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 PPP4R2Q9NY27 417 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 DDX41Q9UJV9 622 aaKnown RBP17.89■□□□□ 0.45
LIMS1-211ENST00000462817 GRIN2DO15399 1336 aa17.89■□□□□ 0.45
LIMS1-211ENST00000462817 LAMC2Q13753 1193 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 RTN1Q16799 776 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 GNPTABQ3T906 1256 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 GPR153Q6NV75 609 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 APOA5Q6Q788 366 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 TMTC3Q6ZXV5 915 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 JAKMIP1Q96N16 626 aaKnown RBP17.88■□□□□ 0.45
LIMS1-211ENST00000462817 TRPV6Q9H1D0 765 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 ALDH8A1Q9H2A2 487 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-211ENST00000462817 NOD1Q9Y239 953 aa17.88■□□□□ 0.45
LIMS1-211ENST00000462817 KLF18A0A0U1RQI7 1052 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 hCG_1642624A0A1W2PR95 340 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 GOLGA8AA7E2F4 631 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 GOLGA8BA8MQT2 603 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 B4GALT4O60513 344 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 MMP3P08254 477 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 ARHGAP1Q07960 439 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 DGKDQ16760 1214 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 NBPF20Q3BBV1 942 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 USP17L6PQ6QN14 398 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 BLOC1S2Q6QNY1 142 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 HEATR3Q7Z4Q2 680 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 DEFB123Q8N688 67 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 ZFP91Q96JP5 570 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-211ENST00000462817 PSTPIP2Q9H939 334 aa17.87■□□□□ 0.45
LIMS1-211ENST00000462817 KIAA1217Q5T5P2 1943 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 TGFB3P10600 412 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 CSF2RAP15509 400 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 PSMA5P28066 241 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 CYP2C18P33260 490 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 HSPA4P34932 840 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 ERICH6BQ5W0A0 696 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 NFRKBQ6P4R8 1299 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 IL31RAQ8NI17 732 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 MLXIPQ9HAP2 919 aa17.86■□□□□ 0.45
LIMS1-211ENST00000462817 SORBS3O60504 671 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 STAM2O75886 525 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 GGPS1O95749 300 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 EPHB4P54760 987 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 CCL23P55773 120 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 SPATA33Q96N06 139 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 TRMT13Q9NUP7 481 aaKnown RBP17.85■□□□□ 0.45
LIMS1-211ENST00000462817 RTEL1Q9NZ71 1219 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 BRPF3Q9ULD4 1205 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 SNX14Q9Y5W7 946 aa17.85■□□□□ 0.45
LIMS1-211ENST00000462817 SPDYE3A6NKU9 549 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 CPA1P15085 419 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 PTPN11Q06124 597 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-211ENST00000462817 PSRC1Q6PGN9 363 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-211ENST00000462817 Q6ZUG5 572 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 Q7L0L9 218 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 PPTC7Q8NI37 304 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 PPP1R13LQ8WUF5 828 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 EMID1Q96A84 441 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-211ENST00000462817 KATNAL1Q9BW62 490 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 EHMT1Q9H9B1 1298 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 SZT2Q5T011 3432 aa17.84■□□□□ 0.45
LIMS1-211ENST00000462817 LAMA3Q16787 3333 aa17.83■□□□□ 0.45
LIMS1-211ENST00000462817 CCDC196A0A1B0GTZ2 297 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 PIK3CDO00329 1044 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 MEIS2O14770 477 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 RGS20O76081 388 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 ACRP10323 421 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 CYP2C9P11712 490 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 METAP2P50579 478 aaKnown RBP eCLIP17.83■□□□□ 0.44
LIMS1-211ENST00000462817 NAPAP54920 295 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 CELF3Q5SZQ8 465 aaKnown RBP17.83■□□□□ 0.44
LIMS1-211ENST00000462817 XRRA1Q6P2D8 792 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 NLRX1Q86UT6 975 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 RPUSD2Q8IZ73 545 aaKnown RBP17.83■□□□□ 0.44
LIMS1-211ENST00000462817 C7orf31Q8N865 590 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 RETREG2Q8NC44 543 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 GPKOWQ92917 476 aaPredicted RBP eCLIP17.83■□□□□ 0.44
LIMS1-211ENST00000462817 KCNB2Q92953 911 aa17.83■□□□□ 0.44
LIMS1-211ENST00000462817 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.83■□□□□ 0.44
LIMS1-211ENST00000462817 NOC4LQ9BVI4 516 aaKnown RBP17.83■□□□□ 0.44
LIMS1-211ENST00000462817 MTIF3Q9H2K0 278 aaKnown RBP17.83■□□□□ 0.44
LIMS1-211ENST00000462817 NOP56O00567 594 aaKnown RBP17.82■□□□□ 0.44
LIMS1-211ENST00000462817 FIBPO43427 364 aa17.82■□□□□ 0.44
LIMS1-211ENST00000462817 PPFIA4O75335 1185 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms