RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 MYCBPQ99417 103 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ALG1Q9BT22 464 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PLEKHA5Q9HAU0 1116 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 RASSF1Q9NS23 344 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 BLOC1S4Q9NUP1 217 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 PCDHA8Q9Y5H6 950 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ERBB4Q15303 1308 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 LOC102724428A0A0B4J2F2 783 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 DCDC2BA2VCK2 349 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 B4DLN1 442 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 AKAP5P24588 427 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 OAS2P29728 719 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 GRK4P32298 578 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SIK1P57059 783 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ZBED6P86452 979 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 SFSWAPQ12872 951 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 RETSATQ6NUM9 610 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 EP400NLQ6ZTU2 488 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 DHX32Q7L7V1 743 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CHST15Q7LFX5 561 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 NDUFAF2Q8N183 169 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF527Q8NB42 609 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CLRN3Q8NCR9 226 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 C7orf43Q8WVR3 580 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF775Q96BV0 537 aaPredicted RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 ANP32EQ9BTT0 268 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 WDR12Q9GZL7 423 aaKnown RBP2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 CYP26B1Q9NR63 512 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 VPS45Q9NRW7 570 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 TBC1D22BQ9NU19 505 aa2.72□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM227AF5H4B4 570 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 KPNA5O15131 536 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 DLX3O60479 287 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 B3GALT4O96024 378 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 C6orf222P0C671 652 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 CTNNA1P35221 906 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 PPM1AP35813 382 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 ARL4DP49703 201 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 ATP11AP98196 1134 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 KIF23Q02241 960 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 INPP5AQ14642 412 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 LAPTM4AQ15012 233 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF174Q15697 407 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RNF220Q5VTB9 566 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 LMBRD2Q68DH5 695 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 LYSMD3Q7Z3D4 306 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RAB44Q7Z6P3 723 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 SAPCD2Q86UD0 394 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM26EQ8N5C1 309 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 PPM1NQ8N819 430 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 C2orf69Q8N8R5 385 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 FLCNQ8NFG4 579 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RSPH1Q8WYR4 309 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 UBXN10Q96LJ8 280 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 NUP62CLQ9H1M0 184 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 AGO4Q9HCK5 861 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 KMT5AQ9NQR1 393 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 LRRC4BQ9NT99 713 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 DNAJC28Q9NX36 388 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 GPRC5BQ9NZH0 403 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 WHRNQ9P202 907 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 LRFN1Q9P244 771 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 COQ6Q9Y2Z9 468 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 CLSPNQ9HAW4 1339 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 EIF3FO00303 357 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 IRAK2O43187 625 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TBX1O43435 398 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 ERVK-21P61565 698 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 GALEQ14376 348 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 LRRC32Q14392 662 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TUBB8Q3ZCM7 444 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 BROXQ5VW32 411 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RFX8Q6ZV50 586 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 PDZD4Q76G19 769 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 DENND1CQ8IV53 801 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 CHST14Q8NCH0 376 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 PPP1R35Q8TAP8 253 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RUBCNQ92622 972 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 SECISBP2LQ93073 1101 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC74BQ96LY2 380 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 POLHQ9Y253 713 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 PTPDC1A2A3K4 754 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RNF223E7ERA6 249 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 NCAM2O15394 837 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 MAFKO60675 156 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TMEM127O75204 238 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 BAIAP3O94812 1187 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TNFSF4P23510 183 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 CNTFP26441 200 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RPIAP49247 311 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 RNF144AP50876 292 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 DSG1Q02413 1049 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF423Q2M1K9 1284 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TBC1D10BQ4KMP7 808 aaPredicted RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 INTS11Q5TA45 600 aaKnown RBP2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 SCARA3Q6AZY7 606 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 TLDC1Q6P9B6 456 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 LRFN4Q6PJG9 635 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 ADAMTSL4Q6UY14 1074 aa2.71□□□□□ -1.98
CCDC88A-208ENST00000444458 Q6ZVU0 165 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms