RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ERCC5P28715 1186 aaPredicted RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 GNA11P29992 359 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 GNAQP50148 359 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 CLCN6P51797 869 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 ZNF543Q08ER8 600 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 CTTNQ14247 550 aaKnown RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 FAM83BQ5T0W9 1011 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 ZNF658Q5TYW1 1059 aaPredicted RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 CNOT6LQ96LI5 555 aaKnown RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 PYM1Q9BRP8 204 aaKnown RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 TUBGCP2Q9BSJ2 902 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 COA1Q9GZY4 146 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 ZMYND12Q9H0C1 365 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 SEMA6BQ9H3T3 888 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 PCDHA12Q9UN75 941 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.34□□□□□ -0.91
CD44-208ENST00000428726 A0A1B0GTH6 734 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 RCCD1A6NED2 376 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 CCP110O43303 1012 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 TUBB4AP04350 444 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 HERC4Q5GLZ8 1057 aaPredicted RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 TCERG1LQ5VWI1 586 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 SIAH1Q8IUQ4 282 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 KRT222Q8N1A0 295 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 CALML4Q96GE6 196 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 MASTLQ96GX5 879 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 PNMA5Q96PV4 448 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 ZNF287Q9HBT7 754 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 SH3GLB2Q9NR46 395 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 MAGEC2Q9UBF1 373 aaPredicted RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 USP20Q9Y2K6 914 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 SBF2Q86WG5 1849 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 M0R2N6 131 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 TRAF5O00463 557 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 BUB1O43683 1085 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 ATXN8OSP0DMR3 200 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 POTEAQ6S8J7 498 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 ZNF397Q8NF99 534 aaPredicted RBP9.34□□□□□ -0.91
CD44-208ENST00000428726 BLOC1S4Q9NUP1 217 aa9.34□□□□□ -0.91
CD44-208ENST00000428726 PSMD14O00487 310 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 NDUFB10O96000 172 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 LONP1P36776 959 aaKnown RBP9.33□□□□□ -0.92
CD44-208ENST00000428726 CASP5P51878 434 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 ABCB5Q2M3G0 1257 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 HAS1Q92839 578 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 DUSP9Q99956 384 aaKnown RBP9.33□□□□□ -0.92
CD44-208ENST00000428726 GTPBP4Q9BZE4 634 aaKnown RBP9.33□□□□□ -0.92
CD44-208ENST00000428726 LACRTQ9GZZ8 138 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 RABEP2Q9H5N1 569 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.33□□□□□ -0.92
CD44-208ENST00000428726 PSMA7O14818 248 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 ARHGAP6O43182 974 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 MFAP3LO75121 409 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 PRPF6O94906 941 aaKnown RBP9.33□□□□□ -0.92
CD44-208ENST00000428726 ACTN1P12814 892 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 PLCG2P16885 1265 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 SV2BQ7L1I2 683 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 SAMD7Q7Z3H4 446 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 TBC1D22AQ8WUA7 517 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 CRAMP1Q96RY5 1269 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 CHORDC1Q9UHD1 332 aaPredicted RBP9.33□□□□□ -0.92
CD44-208ENST00000428726 PACSIN2Q9UNF0 486 aaPredicted RBP9.33□□□□□ -0.92
CD44-208ENST00000428726 ADGRG1Q9Y653 693 aa9.33□□□□□ -0.92
CD44-208ENST00000428726 ANKRD65E5RJM6 399 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 ALDH1B1P30837 517 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 FAM193AP78312 1265 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 TERF2Q15554 542 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 KRT79Q5XKE5 535 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 TPH2Q8IWU9 490 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 ADSSL1Q8N142 457 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 LARP4BQ92615 738 aaKnown RBP9.32□□□□□ -0.92
CD44-208ENST00000428726 ABHD10Q9NUJ1 306 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 TMCO5BA8MYB1 307 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 FAM86B1E9PN63 330 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 NCK2O43639 380 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 MED24O75448 989 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 CLSTN1O94985 981 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 CCDC175P0C221 793 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 FAM86B2P0C5J1 330 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 DPEP1P16444 411 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 PDE6BP35913 854 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 PPP2R3AQ06190 1150 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 GABPAQ06546 454 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 TBX2Q13207 712 aaPredicted RBP9.32□□□□□ -0.92
CD44-208ENST00000428726 MKRN4PQ13434 485 aaPredicted RBP9.32□□□□□ -0.92
CD44-208ENST00000428726 TDRD12Q587J7 1177 aaKnown RBP9.32□□□□□ -0.92
CD44-208ENST00000428726 DCAF17Q5H9S7 520 aaPredicted RBP9.32□□□□□ -0.92
CD44-208ENST00000428726 DACT2Q5SW24 774 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 CDKAL1Q5VV42 579 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 ARL6IP4Q66PJ3 421 aaKnown RBP9.32□□□□□ -0.92
CD44-208ENST00000428726 RRAGAQ7L523 313 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 KRT25Q7Z3Z0 450 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 KIAA1328Q86T90 577 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 GPBP1Q86WP2 473 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 FEZ1Q99689 392 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 MLXIPQ9HAP2 919 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 ADAMTSL1Q8N6G6 1762 aa9.32□□□□□ -0.92
CD44-208ENST00000428726 LRRN2O75325 713 aa9.31□□□□□ -0.92
CD44-208ENST00000428726 RXRBP28702 533 aa9.31□□□□□ -0.92
CD44-208ENST00000428726 HOXA10P31260 410 aaPredicted RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms