RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.63□□□□□ -1.83
PTPRC-208ENST00000427110 PFDN2Q9UHV9 154 aa3.63□□□□□ -1.83
PTPRC-208ENST00000427110 FAN1Q9Y2M0 1017 aa3.63□□□□□ -1.83
PTPRC-208ENST00000427110 TMA7Q9Y2S6 64 aaKnown RBP3.63□□□□□ -1.83
PTPRC-208ENST00000427110 MSRB2Q9Y3D2 182 aa3.63□□□□□ -1.83
PTPRC-208ENST00000427110 TRBV23OR9-2A0A075B6M9 112 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 A0A0G2JLL6 359 aaPredicted RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 A0A1W2PQU0 124 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 FAM221BA6H8Z2 402 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 OTOL1A6NHN0 477 aaPredicted RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 MEFVO15553 781 aaPredicted RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 SMARCA5O60264 1052 aaPredicted RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 GFRA1P56159 465 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 PPP2R2AP63151 447 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 RASGRF1Q13972 1273 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 TARBP2Q15633 366 aaKnown RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 CEP68Q76N32 757 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 STK32CQ86UX6 486 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 TMEM151BQ8IW70 566 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 FAM26EQ8N5C1 309 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 MARCH10Q8NA82 808 aaPredicted RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 NETO2Q8NC67 525 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 RCBTB1Q8NDN9 531 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 ST13P5Q8NFI4 369 aaPredicted RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 SMARCC2Q8TAQ2 1214 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 FNIP1Q8TF40 1166 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 ZNF526Q8TF50 670 aaPredicted RBP3.62□□□□□ -1.83
PTPRC-208ENST00000427110 DIO2Q92813 273 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 DDX11Q96FC9 970 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 TSPAN17Q96FV3 270 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 PEX11GQ96HA9 241 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 CHAMP1Q96JM3 812 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 KCNC2Q96PR1 638 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 DNAJC7Q99615 494 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 IER2Q9BTL4 223 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 EPN3Q9H201 632 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 PCDHA2Q9Y5H9 948 aa3.62□□□□□ -1.83
PTPRC-208ENST00000427110 BLACEA4D250 179 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 IQCA1LA6NCM1 817 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 SGSM2O43147 1006 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 SCG5P05408 212 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 C8BP07358 591 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 NCAM1P13591 858 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 HOXC12P31275 282 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 CTSWP56202 376 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 RPL11P62913 178 aaKnown RBP3.61□□□□□ -1.83
PTPRC-208ENST00000427110 SSRP1Q08945 709 aaKnown RBP3.61□□□□□ -1.83
PTPRC-208ENST00000427110 SMAD4Q13485 552 aaKnown RBP3.61□□□□□ -1.83
PTPRC-208ENST00000427110 VWA3BQ502W6 1294 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 GIMAP6Q6P9H5 292 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 SPATC1Q76KD6 591 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 LRP10Q7Z4F1 713 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 LRRC47Q8N1G4 583 aaKnown RBP3.61□□□□□ -1.83
PTPRC-208ENST00000427110 TRMT2BQ96GJ1 504 aaKnown RBP3.61□□□□□ -1.83
PTPRC-208ENST00000427110 C1orf159Q96HA4 380 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 ADAM7Q9H2U9 754 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 PPARGC1AQ9UBK2 798 aaKnown RBP3.61□□□□□ -1.83
PTPRC-208ENST00000427110 NUDT5Q9UKK9 219 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 PALD1Q9ULE6 856 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 TIMM13Q9Y5L4 95 aaPredicted RBP3.61□□□□□ -1.83
PTPRC-208ENST00000427110 PMF1-BGLAPU3KQ54 211 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 KDM2BQ8NHM5 1336 aa3.61□□□□□ -1.83
PTPRC-208ENST00000427110 LOC105371045A0A1W2PR82 267 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 DLX3O60479 287 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 MSCO60682 206 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 CAPNS1P04632 268 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 STAT5AP42229 794 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 DLX2Q07687 328 aaPredicted RBP3.6□□□□□ -1.83
PTPRC-208ENST00000427110 KCNAB2Q13303 367 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 SLC35F1Q5T1Q4 408 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 YOD1Q5VVQ6 348 aaPredicted RBP3.6□□□□□ -1.83
PTPRC-208ENST00000427110 USP53Q70EK8 1073 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 MILR1Q7Z6M3 343 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 B3GNT8Q7Z7M8 397 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 DCP2Q8IU60 420 aaKnown RBP3.6□□□□□ -1.83
PTPRC-208ENST00000427110 LINC01356Q8N9X3 169 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 TMEM169Q96HH4 297 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 SPATA25Q9BR10 227 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 XYLT2Q9H1B5 865 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 CLDND1Q9NY35 253 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 MRPL42Q9Y6G3 142 aaKnown RBP3.6□□□□□ -1.83
PTPRC-208ENST00000427110 SHROOM4Q9ULL8 1493 aa3.6□□□□□ -1.83
PTPRC-208ENST00000427110 TLDC2A0PJX2 215 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 PRODHO43272 600 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 MYO1BO43795 1136 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 DIAPH1O60610 1272 aaKnown RBP3.59□□□□□ -1.83
PTPRC-208ENST00000427110 SASH1O94885 1247 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 CPP00450 1065 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 LTBRP36941 435 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 SLURP1P55000 103 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 HTRA3P83110 453 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 CACNB2Q08289 660 aaPredicted RBP3.59□□□□□ -1.83
PTPRC-208ENST00000427110 ACBD5Q5T8D3 534 aaPredicted RBP3.59□□□□□ -1.83
PTPRC-208ENST00000427110 E4F1Q66K89 784 aaPredicted RBP3.59□□□□□ -1.83
PTPRC-208ENST00000427110 KCNT2Q6UVM3 1135 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 LIPIQ6XZB0 460 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 JAZF1Q86VZ6 243 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 SH3TC2Q8TF17 1288 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 ZBTB8AQ96BR9 441 aa3.59□□□□□ -1.83
PTPRC-208ENST00000427110 IPO9Q96P70 1041 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms