RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 PVALEFA0A1B0GWK0 134 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 BICDL2A1A5D9 508 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 PSMA7O14818 248 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 AP5Z1O43299 807 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 SLC37A4O43826 429 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 PPP1R12BO60237 982 aaPredicted RBP10.6□□□□□ -0.71
HMGB4-201ENST00000425537 ZNF500O60304 480 aaPredicted RBP10.6□□□□□ -0.71
HMGB4-201ENST00000425537 RHOBTB3O94955 611 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 CFBP00751 764 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 CCT6AP40227 531 aaKnown RBP10.6□□□□□ -0.71
HMGB4-201ENST00000425537 BACE1P56817 501 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 FANCCQ00597 558 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 SETQ01105 290 aaPredicted RBP10.6□□□□□ -0.71
HMGB4-201ENST00000425537 PSMD2Q13200 908 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 NCAPHQ15003 741 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 FILIP1LQ4L180 1135 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 CNNM4Q6P4Q7 775 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 SPC24Q8NBT2 197 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 CCDC150Q8NCX0 1101 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 NOC3LQ8WTT2 800 aaKnown RBP10.6□□□□□ -0.71
HMGB4-201ENST00000425537 CRYGNQ8WXF5 182 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 LARP4BQ92615 738 aaKnown RBP10.6□□□□□ -0.71
HMGB4-201ENST00000425537 C12orf42Q96LP6 360 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 KCNMB3Q9NPA1 279 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 RWDD2AQ9UIY3 292 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 NFE2L3Q9Y4A8 694 aa10.6□□□□□ -0.71
HMGB4-201ENST00000425537 MYPNQ86TC9 1320 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 PASKQ96RG2 1323 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 PP2D1A8MPX8 630 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 FLOT1O75955 427 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 KIF20AO95235 890 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 TPM2P07951 284 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 PTPRAP18433 802 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 MUTP22033 750 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 CDC25AP30304 524 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 INPP5BP32019 993 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 OAZ1P54368 228 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 UBASH3AP57075 661 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 SNAP25P60880 206 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 ASIC1P78348 528 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 FSTL1Q12841 308 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 PAK1Q13153 545 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 CUL4BQ13620 913 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 TTLL12Q14166 644 aaPredicted RBP10.59□□□□□ -0.71
HMGB4-201ENST00000425537 TKFCQ3LXA3 575 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 PRR16Q569H4 304 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 KIAA1755Q5JYT7 1200 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 HYIQ5T013 277 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 CST9Q5W186 159 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 PAXIP1Q6ZW49 1069 aaPredicted RBP10.59□□□□□ -0.71
HMGB4-201ENST00000425537 RAD54LQ92698 747 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 DHTKD1Q96HY7 919 aaPredicted RBP10.59□□□□□ -0.71
HMGB4-201ENST00000425537 IFNKQ9P0W0 207 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 PPP1R9AQ9ULJ8 1098 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 CSADQ9Y600 493 aa10.59□□□□□ -0.71
HMGB4-201ENST00000425537 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.59□□□□□ -0.71
HMGB4-201ENST00000425537 A0A087WWV3 80 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 FGFR1OPO95684 399 aaKnown RBP10.58□□□□□ -0.72
HMGB4-201ENST00000425537 VCAM1P19320 739 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 BMP6P22004 513 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 IREB2P48200 963 aaKnown RBP10.58□□□□□ -0.72
HMGB4-201ENST00000425537 HSD17B4P51659 736 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 GHRHRQ02643 423 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 SPP2Q13103 211 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 GRB10Q13322 594 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 MTMR2Q13614 643 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 TMEM119Q4V9L6 283 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 COBLL1Q53SF7 1204 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 NAALADL2Q58DX5 795 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 XRRA1Q6P2D8 792 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 SAMD1Q6SPF0 538 aaPredicted RBP10.58□□□□□ -0.72
HMGB4-201ENST00000425537 NIPA1Q7RTP0 329 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 CCDC186Q7Z3E2 898 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 FCHSD1Q86WN1 690 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 FAM114A1Q8IWE2 563 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 ZC3H15Q8WU90 426 aaKnown RBP10.58□□□□□ -0.72
HMGB4-201ENST00000425537 HAS1Q92839 578 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 KLRG1Q96E93 195 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 WDR11Q9BZH6 1224 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 TRIM9Q9C026 710 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 XPO4Q9C0E2 1151 aaKnown RBP10.58□□□□□ -0.72
HMGB4-201ENST00000425537 BLZF1Q9H2G9 400 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 RPAP3Q9H6T3 665 aaPredicted RBP10.58□□□□□ -0.72
HMGB4-201ENST00000425537 SLC38A10Q9HBR0 1119 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 FANCLQ9NW38 375 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 HOXC10Q9NYD6 342 aa10.58□□□□□ -0.72
HMGB4-201ENST00000425537 ABT1Q9ULW3 272 aaKnown RBP10.58□□□□□ -0.72
HMGB4-201ENST00000425537 OTOFQ9HC10 1997 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 RBBP6Q7Z6E9 1792 aaKnown RBP10.57□□□□□ -0.72
HMGB4-201ENST00000425537 POTEMA6NI47 508 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 PPP1R3GB7ZBB8 358 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 OPLAHO14841 1288 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 ABCB7O75027 752 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 HOXA13P31271 388 aaPredicted RBP10.57□□□□□ -0.72
HMGB4-201ENST00000425537 APLP1P51693 650 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 MAP3K9P80192 1104 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 PDE4DQ08499 809 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 KMT5BQ4FZB7 885 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 KLHL10Q6JEL2 608 aa10.57□□□□□ -0.72
HMGB4-201ENST00000425537 UNC13DQ70J99 1090 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms