RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 SPIRE1Q08AE8 756 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 SARM1Q6SZW1 724 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 MOB2Q70IA6 237 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 MLKLQ8NB16 471 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 RBM46Q8TBY0 533 aaKnown RBP23.59■■□□□ 1.37
GPC1-202ENST00000420138 ZKSCAN5Q9Y2L8 839 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 COG2Q14746 738 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 ECM1Q16610 540 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 PLA2G4DQ86XP0 818 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 SLFN12Q8IYM2 578 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 ANKRD13AQ8IZ07 590 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 MED15Q96RN5 788 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 BLOC1S4Q9NUP1 217 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 TMOD4Q9NZQ9 345 aa23.59■■□□□ 1.37
GPC1-202ENST00000420138 TRAF5O00463 557 aa23.58■■□□□ 1.37
GPC1-202ENST00000420138 MSH4O15457 936 aa23.58■■□□□ 1.37
GPC1-202ENST00000420138 ARMC9Q7Z3E5 817 aa23.58■■□□□ 1.37
GPC1-202ENST00000420138 CLMNQ96JQ2 1002 aa23.58■■□□□ 1.37
GPC1-202ENST00000420138 MAGEF1Q9HAY2 307 aa23.58■■□□□ 1.37
GPC1-202ENST00000420138 RPTORQ8N122 1335 aa23.58■■□□□ 1.36
GPC1-202ENST00000420138 UBXN2AP68543 259 aa23.57■■□□□ 1.36
GPC1-202ENST00000420138 TMEM119Q4V9L6 283 aa23.57■■□□□ 1.36
GPC1-202ENST00000420138 MCF2L2Q86YR7 1114 aa23.57■■□□□ 1.36
GPC1-202ENST00000420138 SNX29Q8TEQ0 813 aa23.57■■□□□ 1.36
GPC1-202ENST00000420138 CALML4Q96GE6 196 aa23.57■■□□□ 1.36
GPC1-202ENST00000420138 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.57■■□□□ 1.36
GPC1-202ENST00000420138 ZNF214Q9UL59 606 aaPredicted RBP23.57■■□□□ 1.36
GPC1-202ENST00000420138 RIPK3Q9Y572 518 aa23.57■■□□□ 1.36
GPC1-202ENST00000420138 MARCH6O60337 910 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 FMR1Q06787 632 aaKnown RBP eCLIP23.56■■□□□ 1.36
GPC1-202ENST00000420138 KRT79Q5XKE5 535 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 FAM20AQ96MK3 541 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 ZNF408Q9H9D4 720 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 HOMER2Q9NSB8 354 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 PNMA2Q9UL42 364 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 SMTNL1A8MU46 457 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 KLRC4O43908 158 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 RPN1P04843 607 aaKnown RBP23.56■■□□□ 1.36
GPC1-202ENST00000420138 MYL1P05976 194 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 CD44P16070 742 aaKnown RBP23.56■■□□□ 1.36
GPC1-202ENST00000420138 ZNF75DP51815 510 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 MYL5Q02045 173 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 HYIQ5T013 277 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 SYTL5Q8TDW5 730 aaPredicted RBP23.56■■□□□ 1.36
GPC1-202ENST00000420138 ELP3Q9H9T3 547 aa23.56■■□□□ 1.36
GPC1-202ENST00000420138 ATP2A1O14983 1001 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 STAT3P40763 770 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 OAZ1P54368 228 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 TMEM132BQ14DG7 1078 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 TREML2Q5T2D2 321 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 KCNK18Q7Z418 384 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 TRERF1Q96PN7 1200 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 MAP3K20Q9NYL2 800 aaKnown RBP23.55■■□□□ 1.36
GPC1-202ENST00000420138 STK17AQ9UEE5 414 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 VAV3Q9UKW4 847 aa23.55■■□□□ 1.36
GPC1-202ENST00000420138 SPDYE16A6NNV3 312 aaPredicted RBP23.54■■□□□ 1.36
GPC1-202ENST00000420138 PPP1R3GB7ZBB8 358 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 IRF6O14896 467 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 ZNF76P36508 570 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 PPATQ06203 517 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 POTEEQ6S8J3 1075 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 SAMD3Q8N6K7 520 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 TRIM9Q9C026 710 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 EHMT1Q9H9B1 1298 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 MYPNQ86TC9 1320 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 SPDYE5A6NIY4 337 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 RPS6P62753 249 aaKnown RBP23.54■■□□□ 1.36
GPC1-202ENST00000420138 CEP55Q53EZ4 464 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 ERO1BQ86YB8 467 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 SMYD4Q8IYR2 804 aaPredicted RBP23.54■■□□□ 1.36
GPC1-202ENST00000420138 C7orf25Q9BPX7 421 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 TRIM5Q9C035 493 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 CTDP1Q9Y5B0 961 aaPredicted RBP23.54■■□□□ 1.36
GPC1-202ENST00000420138 FRMPD4Q14CM0 1322 aa23.54■■□□□ 1.36
GPC1-202ENST00000420138 MEIS1O00470 390 aa23.53■■□□□ 1.36
GPC1-202ENST00000420138 ZNF500O60304 480 aaPredicted RBP23.53■■□□□ 1.36
GPC1-202ENST00000420138 SLC30A10Q6XR72 485 aa23.53■■□□□ 1.36
GPC1-202ENST00000420138 IL31RAQ8NI17 732 aa23.53■■□□□ 1.36
GPC1-202ENST00000420138 ZFP91Q96JP5 570 aaPredicted RBP23.53■■□□□ 1.36
GPC1-202ENST00000420138 DACH1Q9UI36 760 aa23.53■■□□□ 1.36
GPC1-202ENST00000420138 A0A0G2JLL6 359 aaPredicted RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 ERCC5P28715 1186 aaPredicted RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 KCNB1Q14721 858 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 CT47A1Q5JQC4 288 aaPredicted RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 PRRT2Q7Z6L0 340 aaPredicted RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 ENOX1Q8TC92 643 aaKnown RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 RAD54LQ92698 747 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 OTUD5Q96G74 571 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 RNF146Q9NTX7 359 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 HOXC10Q9NYD6 342 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 LOC285556D6RIA3 1793 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 TRPM7Q96QT4 1865 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 MCM6Q14566 821 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 ZNF658Q5TYW1 1059 aaPredicted RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 SNRNP48Q6IEG0 339 aaKnown RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 LARP4BQ92615 738 aaKnown RBP23.52■■□□□ 1.36
GPC1-202ENST00000420138 TAAR1Q96RJ0 339 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 RMND1Q9NWS8 449 aa23.52■■□□□ 1.36
GPC1-202ENST00000420138 COL11A1P12107 1806 aaPredicted RBP23.51■■□□□ 1.35
GPC1-202ENST00000420138 SLC26A4O43511 780 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms