RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 STIM2Q9P246 746 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 LMNB1P20700 586 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 CA8P35219 290 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 USP11P51784 963 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 KIF11P52732 1056 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 TRMT44Q8IYL2 757 aaKnown RBP13.13□□□□□ -0.31
PTPRF-205ENST00000414879 LPAR1Q92633 364 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 PARVGQ9HBI0 331 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 FMN2Q9NZ56 1722 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 TCP1P17987 556 aaKnown RBP13.13□□□□□ -0.31
PTPRF-205ENST00000414879 PDE6CP51160 858 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 EXOC3L4Q17RC7 722 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 TKFCQ3LXA3 575 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 C6orf163Q5TEZ5 329 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 RNF207Q6ZRF8 634 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 GPT2Q8TD30 523 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 CALR3Q96L12 384 aaKnown RBP13.13□□□□□ -0.31
PTPRF-205ENST00000414879 V9GYY5 206 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-205ENST00000414879 PVALEFA0A1B0GWK0 134 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 MTMR3Q13615 1198 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 MCPH1Q8NEM0 835 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 FAM207AQ9NSI2 230 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-205ENST00000414879 HESX1Q9UBX0 185 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 GINS2Q9Y248 185 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 FAM169AQ9Y6X4 670 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 KRT19P08727 400 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 RAD51AP2Q09MP3 1159 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 HADHQ16836 314 aaKnown RBP13.13□□□□□ -0.31
PTPRF-205ENST00000414879 PDZD4Q76G19 769 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-205ENST00000414879 NT5C1BQ96P26 610 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 RAB17Q9H0T7 212 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 KIAA1586Q9HCI6 787 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 BARHL2Q9NY43 387 aa13.13□□□□□ -0.31
PTPRF-205ENST00000414879 EVCP57679 992 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 KCNV1Q6PIU1 500 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 CLEC17AQ6ZS10 378 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 CAPZA3Q96KX2 299 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 TUBGCP2Q9BSJ2 902 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 FANCLQ9NW38 375 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 NEDD4P46934 1319 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 PDS5AQ29RF7 1337 aaKnown RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 LRRIQ4A6NIV6 560 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 LDHAP00338 332 aaKnown RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 H2AFZP0C0S5 128 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 RESP18Q5W5W9 173 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 H2AFVQ71UI9 128 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 FASTKD5Q7L8L6 764 aaKnown RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 PROM2Q8N271 834 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 NSMCE1Q8WV22 266 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 COA7Q96BR5 231 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 CCDC114Q96M63 670 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 SLC39A2Q9NP94 309 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 KMT5AQ9NQR1 393 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 DISC1Q9NRI5 854 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 NYAP2Q9P242 653 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 SEL1LQ9UBV2 794 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 ZNF609O15014 1411 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 SLC16A2P36021 539 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 RFX5P48382 616 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 PAK2Q13177 524 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 NSUN6Q8TEA1 469 aaKnown RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 POMGNT1Q8WZA1 660 aa13.12□□□□□ -0.31
PTPRF-205ENST00000414879 CNOT6LQ96LI5 555 aaKnown RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 TDRD3Q9H7E2 651 aaKnown RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 RNF216Q9NWF9 866 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 SEPT9Q9UHD8 586 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-205ENST00000414879 CYP2D7A0A087X1C5 515 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 GRIN3BO60391 1043 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 AFPP02771 609 aaKnown RBP13.11□□□□□ -0.31
PTPRF-205ENST00000414879 PTK2Q05397 1052 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 GRK7Q8WTQ7 553 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 NBPF3Q9H094 633 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 SERPINA10Q9UK55 444 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 TNS2Q63HR2 1409 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 HNRNPDLO14979 420 aaKnown RBP13.11□□□□□ -0.31
PTPRF-205ENST00000414879 EXOSC10Q01780 885 aaKnown RBP13.11□□□□□ -0.31
PTPRF-205ENST00000414879 NR5A1Q13285 461 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 STXBP2Q15833 593 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 RUFY4Q6ZNE9 571 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 RNF34Q969K3 372 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 HAUS1Q96CS2 278 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 C19orf81C9J6K1 198 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 PLA2G4BP0C869 781 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 NR2F2P24468 414 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 ITPK1Q13572 414 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 TAOK1Q7L7X3 1001 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 ANKS4BQ8N8V4 417 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 CEP170P1Q96L14 293 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 LCMT1Q9UIC8 334 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 PPP4CP60510 307 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 HYOU1Q9Y4L1 999 aa13.11□□□□□ -0.31
PTPRF-205ENST00000414879 MAP2P11137 1827 aaKnown RBP13.11□□□□□ -0.31
PTPRF-205ENST00000414879 DAPK3O43293 454 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 CYP4A11Q02928 519 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 NEDD9Q14511 834 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 LGSNQ5TDP6 509 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 FAM186BQ8IYM0 893 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 CEP95Q96GE4 821 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 ANKRD36BP1Q96IX9 119 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 INO80BQ9C086 356 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms