RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 C11orf57Q6ZUT1 292 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 APBB1IPQ7Z5R6 666 aaPredicted RBP10.07□□□□□ -0.8
LIG4-202ENST00000405925 FAM83AQ86UY5 434 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 SCYL3Q8IZE3 742 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 PIGOQ8TEQ8 1089 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 EHD4Q9H223 541 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 ZSWIM4Q9H7M6 989 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 LZTFL1Q9NQ48 299 aa10.07□□□□□ -0.8
LIG4-202ENST00000405925 KCNJ18B7U540 433 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 M0QZ92 97 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 SHMT1P34896 483 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 TNNT3P45378 269 aaPredicted RBP10.06□□□□□ -0.8
LIG4-202ENST00000405925 HUNKP57058 714 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 KCNJ12Q14500 433 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 TEX35Q5T0J7 233 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 SPATA1Q5VX52 437 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 RESP18Q5W5W9 173 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 PAGE5Q96GU1 130 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 NLRC4Q9NPP4 1024 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 MAN1B1Q9UKM7 699 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 FAM208AQ9UK61 1670 aaKnown RBP10.06□□□□□ -0.8
LIG4-202ENST00000405925 STXBP3O00186 592 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 KRT5P13647 590 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 MARK3P27448 753 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 SETQ01105 290 aaPredicted RBP10.06□□□□□ -0.8
LIG4-202ENST00000405925 TRPC3Q13507 836 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 BAATQ14032 418 aaPredicted RBP10.06□□□□□ -0.8
LIG4-202ENST00000405925 MIS18BP1Q6P0N0 1132 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 CCDC127Q96BQ5 260 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 ATG4CQ96DT6 458 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 GAKO14976 1311 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 XRCC5P13010 732 aaKnown RBP10.06□□□□□ -0.8
LIG4-202ENST00000405925 TNNI1P19237 187 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 U2AF2P26368 475 aaKnown RBP eCLIP10.06□□□□□ -0.8
LIG4-202ENST00000405925 TMOD1P28289 359 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 KRT83P78385 493 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 SKIDA1Q1XH10 827 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 ARMCX5Q6P1M9 558 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.06□□□□□ -0.8
LIG4-202ENST00000405925 DPF2Q92785 391 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 FAM20AQ96MK3 541 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 MAP3K14Q99558 947 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 CRACR2AQ9BSW2 395 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 IDI2Q9BXS1 227 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 AP5M1Q9H0R1 490 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 VPS33BQ9H267 617 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 GOLPH3LQ9H4A5 285 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 MAD2L2Q9UI95 211 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 LRP6O75581 1613 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 RGPD5Q99666 1765 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 AK9Q5TCS8 1911 aa10.06□□□□□ -0.8
LIG4-202ENST00000405925 PALM3A6NDB9 673 aaPredicted RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 IPO5O00410 1097 aaKnown RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 HNRNPDLO14979 420 aaKnown RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 CELF2O95319 508 aaKnown RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 ADAM9Q13443 819 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 MAP1SQ66K74 1059 aaPredicted RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 EHBP1Q8NDI1 1231 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 GUCA1BQ9UMX6 200 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 POTEB3A0JP26 581 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 POTECB2RU33 542 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 VIL1P09327 827 aaKnown RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 SLURP2P0DP57 97 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 CA8P35219 290 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 CEP55Q53EZ4 464 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 POTEBQ6S5H4 581 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 GPBP1L1Q9HC44 474 aaPredicted RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 POLD4Q9HCU8 107 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 ALS2Q96Q42 1657 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 KRT86O43790 486 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 ATP2C1P98194 919 aaPredicted RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 RASGRP2Q7LDG7 609 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 GPC2Q8N158 579 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 ZNF579Q8NAF0 562 aaKnown RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 RGS22Q8NE09 1264 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 CTNNBL1Q8WYA6 563 aaPredicted RBP10.05□□□□□ -0.8
LIG4-202ENST00000405925 AGBL1Q96MI9 1066 aa10.05□□□□□ -0.8
LIG4-202ENST00000405925 CACNA1FO60840 1977 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 ANKRD62A6NC57 917 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 INO80B-WBP1J3KQ70 363 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 ERLIN2O94905 339 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 PSAPP07602 524 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 KRT19P08727 400 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 ZNF157P51786 506 aaPredicted RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 TRIM14Q14142 442 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 SPECC1LQ69YQ0 1117 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 INO80BQ9C086 356 aaPredicted RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 IL17RBQ9NRM6 502 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 ANKFY1Q9P2R3 1169 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 POTEFA5A3E0 1075 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 E9PMD0 336 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 POTEIP0CG38 1075 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 FCER1AP12319 257 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 NR2F2P24468 414 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 USP11P51784 963 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 LRMPQ12912 555 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 SNAPC2Q13487 334 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 IFI16Q16666 785 aaKnown RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 Q3C1V9 767 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 POTEGQ6S5H5 508 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms