RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 NAPAP54920 295 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 SPIRE1Q08AE8 756 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 NCAPG2Q86XI2 1143 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 HSCBQ8IWL3 235 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 CCDC144CPQ8IYA2 1237 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 REXO1Q8N1G1 1221 aaKnown RBP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 AFAP1L1Q8TED9 768 aa8.03□□□□□ -1.12
LIMA1-202ENST00000394943 GPKOWQ92917 476 aaPredicted RBP eCLIP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 DAXXQ9UER7 740 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-202ENST00000394943 KIF28PB7ZC32 967 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 POTEB2H3BUK9 544 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 CPLX1O14810 134 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 SEPT4O43236 478 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 NASPP49321 788 aaPredicted RBP8.02□□□□□ -1.12
LIMA1-202ENST00000394943 HYIQ5T013 277 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 GIMAP8Q8ND71 665 aaPredicted RBP8.02□□□□□ -1.12
LIMA1-202ENST00000394943 AIFM3Q96NN9 605 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 MPHOSPH6Q99547 160 aaKnown RBP8.02□□□□□ -1.12
LIMA1-202ENST00000394943 PAGR1Q9BTK6 254 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 BEGAINQ9BUH8 593 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 VPS54Q9P1Q0 977 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 PTCH2Q9Y6C5 1203 aa8.02□□□□□ -1.12
LIMA1-202ENST00000394943 NR3C2P08235 984 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 FGD1P98174 961 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 CNTN2Q02246 1040 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 CACNB2Q08289 660 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-202ENST00000394943 PPP2R5CQ13362 524 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 DUSP28Q4G0W2 176 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 EARS2Q5JPH6 523 aaKnown RBP8.02□□□□□ -1.13
LIMA1-202ENST00000394943 NOSTRINQ8IVI9 506 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 CDHR1Q96JP9 859 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 DDX41Q9UJV9 622 aaKnown RBP8.02□□□□□ -1.13
LIMA1-202ENST00000394943 PPME1Q9Y570 386 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 HAS3O00219 553 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 FIBPO43427 364 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 ITGB5P18084 799 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 SYT1P21579 422 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 RGS19P49795 217 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 HEATR3Q7Z4Q2 680 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 RIT2Q99578 217 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 EMSYQ7Z589 1322 aa8.02□□□□□ -1.13
LIMA1-202ENST00000394943 DUSP11O75319 330 aaKnown RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 PSMD10O75832 226 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 ARHGAP4P98171 946 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 RBL2Q08999 1139 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 ACVR2BQ13705 512 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 STXBP2Q15833 593 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 IL31RAQ8NI17 732 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 AGO4Q9HCK5 861 aaKnown RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 A6NJR5 290 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 ADCY3O60266 1144 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 LYPLA2O95372 231 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 TAL1P17542 331 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 GRK4P32298 578 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 ARHGAP1Q07960 439 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 STK3Q13188 491 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 PTPAQ15257 358 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 OXER1Q8TDS5 423 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 C8orf76Q96K31 380 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 FAM20AQ96MK3 541 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 RMDN3Q96TC7 470 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 VAV3Q9UKW4 847 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 PHF24Q9UPV7 400 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 ADCY6O43306 1168 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 KPNA6O60684 536 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 FXR2P51116 673 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 AKAP17AQ02040 695 aaKnown RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 PTPN11Q06124 597 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 BECN1Q14457 450 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 NONOQ15233 471 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 CCL14Q16627 93 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 MFSD14CQ5VZR4 134 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 ARL6IP4Q66PJ3 421 aaKnown RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 PAXIP1Q6ZW49 1069 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 RAB11FIP4Q86YS3 637 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 ANKRD35Q8N283 1001 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 TMEM87AQ8NBN3 555 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 LARP6Q9BRS8 491 aaKnown RBP8.01□□□□□ -1.13
LIMA1-202ENST00000394943 SMC3Q9UQE7 1217 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 IVNS1ABPQ9Y6Y0 642 aa8.01□□□□□ -1.13
LIMA1-202ENST00000394943 FAM86B1E9PN63 330 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 FAM86B2P0C5J1 330 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 USH1GQ495M9 461 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 CEP55Q53EZ4 464 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 USP17L6PQ6QN14 398 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 DIS3L2Q8IYB7 885 aaKnown RBP8□□□□□ -1.13
LIMA1-202ENST00000394943 CPXCR1Q8N123 301 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 PPTC7Q8NI37 304 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 POLR3EQ9NVU0 708 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 STK24Q9Y6E0 443 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 STBD1O95210 358 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 BMP15O95972 392 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 GJA8P48165 433 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 ATP2C1P98194 919 aaPredicted RBP8□□□□□ -1.13
LIMA1-202ENST00000394943 RILPL1Q5EBL4 403 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 CELF3Q5SZQ8 465 aaKnown RBP8□□□□□ -1.13
LIMA1-202ENST00000394943 NEK8Q86SG6 692 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 HAS1Q92839 578 aa8□□□□□ -1.13
LIMA1-202ENST00000394943 CEP89Q96ST8 783 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms