RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCDC127Q96BQ5 260 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 NUDCD1Q96RS6 583 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 TTC1Q99614 292 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 SYCE1LA8MT33 242 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 PPP2R2AP63151 447 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 MYL7Q01449 175 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 TFAP4Q01664 338 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 CDR2Q01850 454 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 FAM102BQ5T8I3 360 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 FBXO31Q5XUX0 539 aaPredicted RBP12.82□□□□□ -0.36
SYNPO-202ENST00000394243 P2RX5Q93086 422 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 DTNBP1Q96EV8 351 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 ETNK1Q9HBU6 452 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 ATG3Q9NT62 314 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 FAM135BQ49AJ0 1406 aa12.82□□□□□ -0.36
SYNPO-202ENST00000394243 K7ENM7 598 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 CFBP00751 764 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 KCNA4P22459 653 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 SLC1A4P43007 532 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 PLCB4Q15147 1175 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 FAM178BQ8IXR5 827 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 GJA10Q969M2 543 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 IL17RAQ96F46 866 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 DHTKD1Q96HY7 919 aaPredicted RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 MLXIPLQ9NP71 852 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 PPP1R12AO14974 1030 aaPredicted RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 SUPT3HO75486 399 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 KIF11P52732 1056 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 MDM2Q00987 491 aaPredicted RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 RAB44Q7Z6P3 723 aaPredicted RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 FANCBQ8NB91 859 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 ICA1LQ8NDH6 482 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 CFAP36Q96G28 342 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 NYXQ9GZU5 481 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 POLR3EQ9NVU0 708 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 CARMIL3Q8ND23 1372 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 STAT2P52630 851 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 MRPS15P82914 257 aaKnown RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 ZNF658Q5TYW1 1059 aaPredicted RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 KIFC3Q9BVG8 833 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 LSG1Q9H089 658 aaKnown RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 MCF2LO15068 1137 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 ZBTB41Q5SVQ8 909 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 MIS12Q9H081 205 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 ING2Q9H160 280 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 STXBP3O00186 592 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 TMOD1P28289 359 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 BASP1P80723 227 aaKnown RBP12.81□□□□□ -0.36
SYNPO-202ENST00000394243 MAN2A1Q16706 1144 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 RFX8Q6ZV50 586 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 TTC17Q96AE7 1141 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 GAS7O60861 476 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 CYP2C19P33261 490 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 ZBED6P86452 979 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 PPARAQ07869 468 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 NACA2Q9H009 215 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 STRIP2Q9ULQ0 834 aa12.81□□□□□ -0.36
SYNPO-202ENST00000394243 SNAPC4Q5SXM2 1469 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ZFYVE9O95405 1425 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 YARSP54577 528 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 SPATA5Q8NB90 893 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 RAPGEF5Q92565 580 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 DDX17Q92841 729 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 EYA1Q99502 592 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 SPDYE16A6NNV3 312 aaPredicted RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 USP27XA6NNY8 438 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 RNMTO43148 476 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 LRRN2O75325 713 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 HSPD1P10809 573 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 HSPA6P17066 643 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 RAP1GDS1P52306 607 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 DYNLT1P63172 113 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 SPDYE2Q495Y8 402 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 GLE1Q53GS7 698 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 FAM161BQ96MY7 647 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 NDE1Q9NXR1 346 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 MAGED2Q9UNF1 606 aaPredicted RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 SERPING1P05155 500 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 CUL3Q13618 768 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ANO5Q75V66 913 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ACSBG1Q96GR2 724 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 AZI2Q9H6S1 392 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 NOP56O00567 594 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 TAF5LO75529 589 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 CUL4AQ13619 759 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ZYXQ15942 572 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 NBPF20Q3BBV1 942 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 PCGF5Q86SE9 256 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 NEK8Q86SG6 692 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 GPKOWQ92917 476 aaPredicted RBP eCLIP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 RWDD2AQ9UIY3 292 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 TSC22D4Q9Y3Q8 395 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 PDZD4Q76G19 769 aaPredicted RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 EPM2AIP1Q7L775 607 aaPredicted RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 RNF169Q8NCN4 708 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 PLBD2Q8NHP8 589 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ZSCAN10Q96SZ4 725 aaPredicted RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 TRIM15Q9C019 465 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms