RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ZBTB18Q99592 522 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 PARVAQ9NVD7 372 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 CCDC22O60826 627 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 P4HA1P13674 534 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 CLCN6P51797 869 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 RARSP54136 660 aaKnown RBP9.43□□□□□ -0.9
LIG3-202ENST00000378526 KRT39Q6A163 491 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 MFN1Q8IWA4 741 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 PLEKHA4Q9H4M7 779 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 TAF4O00268 1085 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 HLA-DOAP06340 250 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 CCDC142Q17RM4 750 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 B4GALNT2Q8NHY0 566 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 STAMQ92783 540 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 AIPL1Q9NZN9 384 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 PITPNM2Q9BZ72 1349 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 FAM95CA0A1B0GW59 222 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ZNF202O95125 648 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ATXN3P54252 364 aaPredicted RBP9.43□□□□□ -0.9
LIG3-202ENST00000378526 SPATA1Q5VX52 437 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 TYW1BQ6NUM6 668 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 C17orf53Q8N3J3 647 aaPredicted RBP9.43□□□□□ -0.9
LIG3-202ENST00000378526 FAM212AQ96EL1 285 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ESYT1Q9BSJ8 1104 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 PNMA2Q9UL42 364 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 POC1B-GALNT4F8VUJ3 575 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 TAF12Q16514 161 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 THOC7Q6I9Y2 204 aaKnown RBP9.43□□□□□ -0.9
LIG3-202ENST00000378526 KRT74Q7RTS7 529 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 CCDC87Q9NVE4 849 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ZNF212Q9UDV6 495 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 SFMBT1Q9UHJ3 866 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 CHMP2BQ9UQN3 213 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 F8W8V4 182 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 ASAP2O43150 1006 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 TUBA1BP68363 451 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 SLC10A5Q5PT55 438 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 TUBA3EQ6PEY2 450 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 TUBA1AQ71U36 451 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.42□□□□□ -0.9
LIG3-202ENST00000378526 NEK9Q8TD19 979 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 SASH1O94885 1247 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 COPB2P35606 906 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 NAPAP54920 295 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 ZMYND12Q9H0C1 365 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 GLT8D2Q9H1C3 349 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 IBTKQ9P2D0 1353 aaPredicted RBP9.42□□□□□ -0.9
LIG3-202ENST00000378526 IDH3BO43837 385 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 ACTN3Q08043 901 aaPredicted RBP9.42□□□□□ -0.9
LIG3-202ENST00000378526 POTEEQ6S8J3 1075 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 PASD1Q8IV76 773 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 TK2O00142 265 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 TAB1Q15750 504 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 BTBD11A6QL63 1104 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 SNPHO15079 494 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 N4BP1O75113 896 aaKnown RBP9.42□□□□□ -0.9
LIG3-202ENST00000378526 IFNB1P01574 187 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 CLK1P49759 484 aaKnown RBP9.42□□□□□ -0.9
LIG3-202ENST00000378526 IGBP1P78318 339 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 GSTO1P78417 241 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 IFIT5Q13325 482 aaKnown RBP9.42□□□□□ -0.9
LIG3-202ENST00000378526 MAPRE2Q15555 327 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 THUMPD2Q9BTF0 503 aaKnown RBP9.42□□□□□ -0.9
LIG3-202ENST00000378526 SMAPO00193 183 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 MAP3K13O43283 966 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 PDE9AO76083 593 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 KIF24Q5T7B8 1368 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 WDR60Q8WVS4 1066 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 CECR2Q9BXF3 1484 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 FKBP14Q9NWM8 211 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 NFE2L3Q9Y4A8 694 aa9.42□□□□□ -0.9
LIG3-202ENST00000378526 PJA2O43164 708 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 MT-ND3P03897 115 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 KRT77Q7Z794 578 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 ERICH3Q5RHP9 1530 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 EXOC1LA0A1B0GW35 172 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 EIF3HO15372 352 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIG3-202ENST00000378526 P4HA2O15460 535 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 POLR2DO15514 142 aaKnown RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 PDE4DQ08499 809 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 PPIDQ08752 370 aaKnown RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 EPS8Q12929 822 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 INPP5AQ14642 412 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 MCMDC2Q4G0Z9 681 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 TRIM50Q86XT4 487 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 SMYD3Q9H7B4 428 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 MAGEA13PA6NCF6 341 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 CLASP2O75122 1294 aaKnown RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 KMT5BQ4FZB7 885 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 SERPINB13Q9UIV8 391 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 ZBTB39O15060 712 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 TRIM24O15164 1050 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 RBM6P78332 1123 aaKnown RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 CYP4A11Q02928 519 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 KCNA1Q09470 495 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 BEND6Q5SZJ8 279 aaPredicted RBP9.41□□□□□ -0.9
LIG3-202ENST00000378526 CYP4A22Q5TCH4 519 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 TADA1Q96BN2 335 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 GNB5O14775 395 aa9.41□□□□□ -0.9
LIG3-202ENST00000378526 CFLARO15519 480 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms