RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 EIF2B5Q13144 721 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ADALQ6DHV7 355 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PKN3Q6P5Z2 889 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM48Q8IWZ4 208 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 MIGA1Q8NAN2 632 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 OR9Q1Q8NGQ5 310 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 HAUS1Q96CS2 278 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 KIFC1Q9BW19 673 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 OSBPL6Q9BZF3 934 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 SENP2Q9HC62 589 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 DISC1Q9NRI5 854 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PARP2Q9UGN5 583 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 RPS6KA6Q9UK32 745 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 A6NJR5 290 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PJA2O43164 708 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 STAM2O75886 525 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 WDR47O94967 919 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 SRGAP2BP0DMP2 458 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CAPN2P17655 700 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 AKAP5P24588 427 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 GARSP41250 739 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 AP2B1P63010 937 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 SEMA3AQ14563 771 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 NOL9Q5SY16 702 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CDC37L1Q7L3B6 337 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 ZNF804AQ7Z570 1209 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 MCF2L2Q86YR7 1114 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CFAP61Q8NHU2 1237 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TDRD7Q8NHU6 1098 aaKnown RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 SPACA7Q96KW9 195 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 UBAP1Q9NZ09 502 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 MYH10P35580 1976 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 A0A1B0GUA9 196 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CFLARO15519 480 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 UBXN1Q04323 297 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TCEAL5Q5H9L2 206 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC183Q5T5S1 534 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 CC2D1AQ6P1N0 951 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 C16orf87Q6PH81 154 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 DTHD1Q6ZMT9 781 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TSGA10Q9BZW7 698 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 UNC45AQ9H3U1 944 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 TTC7AQ9ULT0 858 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-202ENST00000375405 SOX13Q9UN79 622 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 PPP6R1Q9UPN7 881 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 AKT3Q9Y243 479 aa5.02□□□□□ -1.61
SCN1A-202ENST00000375405 IQCA1LA6NCM1 817 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 KCNK3O14649 394 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SNX4O95219 450 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 FLT3P36888 993 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 MAP3K10Q02779 954 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 DRP2Q13474 957 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 THOC5Q13769 683 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 USP39Q53GS9 565 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SDE2Q6IQ49 451 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SULF1Q8IWU6 871 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 DNAAF3Q8N9W5 541 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PYM1Q9BRP8 204 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ARHGEF10LQ9HCE6 1279 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ORC3Q9UBD5 711 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 KCNG1Q9UIX4 513 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 GUCA1BQ9UMX6 200 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 STON1Q9Y6Q2 735 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 AP3D1O14617 1153 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 IFNA14P01570 189 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PSMC3P17980 439 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PPARGP37231 505 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RASSF2P50749 326 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 GOLGA8FQ08AF8 430 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 C20orf194Q5TEA3 1177 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 LDHAL6AQ6ZMR3 332 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 KRBA2Q6ZNG9 492 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PPP1R42Q7Z4L9 355 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RNF139Q8WU17 664 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 HES6Q96HZ4 224 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RAB17Q9H0T7 212 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RUVBL2Q9Y230 463 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 UBE4BO95155 1302 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 A0A0B4J269 797 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ENC1O14682 589 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 KRT33AO76009 404 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 KRT1P04264 644 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PEX19P40855 299 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 STX17P56962 302 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TUBB3Q13509 450 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SGO2Q562F6 1265 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PRPF40BQ6NWY9 871 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 HDXQ7Z353 690 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 UXS1Q8NBZ7 420 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 THRSPQ92748 146 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 DCPSQ96C86 337 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 BCS1LQ9Y276 419 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 NINQ8N4C6 2090 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RAD50Q92878 1312 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ATP1A1P05023 1023 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ENO2P09104 434 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PRKAR2BP31323 418 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TSHZ3Q63HK5 1081 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TAF8Q7Z7C8 310 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms