RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 E2F4Q16254 413 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 XKR9Q5GH70 373 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 CABP7Q86V35 215 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 CCDC170Q8IYT3 715 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 FNBP4Q8N3X1 1017 aaPredicted RBP4.49□□□□□ -1.69
USH2A-202ENST00000366942 BEST2Q8NFU1 509 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 DDX27Q96GQ7 796 aaKnown RBP4.49□□□□□ -1.69
USH2A-202ENST00000366942 MRFAP1L1Q96HT8 127 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 ZNF560Q96MR9 790 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 GAD1Q99259 594 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 SLF1Q9BQI6 1058 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 TSSK1BQ9BXA7 367 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 IDI2Q9BXS1 227 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 C11orf49Q9H6J7 331 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 PFASO15067 1338 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 TMEM232C9JQI7 657 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 MYZAPP0CAP1 466 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 METAP2P50579 478 aaKnown RBP eCLIP4.49□□□□□ -1.69
USH2A-202ENST00000366942 DNA2P51530 1060 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 FPGSQ05932 587 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 PRPSAP1Q14558 356 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 RASA3Q14644 834 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 NFKBIBQ15653 356 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 MAP7D1Q3KQU3 841 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 ANKRD20A8PQ5CZ79 823 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 FYB2Q5VWT5 728 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 ZNF438Q7Z4V0 828 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 MAPKAPK5Q8IW41 473 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 SIX6OS1Q8N1H7 587 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 TMEM145Q8NBT3 493 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 ACDQ96AP0 544 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 YIPF2Q9BWQ6 316 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 ZDHHC4Q9NPG8 344 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 ANKFY1Q9P2R3 1169 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 FEM1BQ9UK73 627 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 GAKO14976 1311 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 PI4KAP2A4QPH2 592 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 KIF3CO14782 793 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 HUS1O60921 280 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 EEF2P13639 858 aaKnown RBP4.49□□□□□ -1.69
USH2A-202ENST00000366942 RBMS1P29558 406 aaKnown RBP4.49□□□□□ -1.69
USH2A-202ENST00000366942 SCARF1Q14162 830 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 PPM1LQ5SGD2 360 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 PI4KAP1Q8N8J0 262 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 GDAP1L1Q96MZ0 367 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 NELL2Q99435 816 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 BAG1Q99933 345 aaPredicted RBP4.49□□□□□ -1.69
USH2A-202ENST00000366942 TEX13BQ9BXU2 312 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 IFIH1Q9BYX4 1025 aaKnown RBP4.49□□□□□ -1.69
USH2A-202ENST00000366942 XPNPEP3Q9NQH7 507 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 DNM3Q9UQ16 869 aa4.49□□□□□ -1.69
USH2A-202ENST00000366942 LRRIQ4A6NIV6 560 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 EYA2O00167 538 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RXRAP19793 462 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ABCB4P21439 1286 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ACCSLQ4AC99 568 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RD3Q7Z3Z2 195 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 CAND1Q86VP6 1230 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 SPATA24Q86W54 205 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 FLCNQ8NFG4 579 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ASAP3Q8TDY4 903 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 LMBR1Q8WVP7 490 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 DPF2Q92785 391 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 SH3KBP1Q96B97 665 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ASIC4Q96FT7 647 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 PRMT6Q96LA8 375 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 DEFB118Q96PH6 123 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RAVER2Q9HCJ3 691 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 CLDND1Q9NY35 253 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 EHBP1L1Q8N3D4 1523 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 CPS1P31327 1500 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 BNIP3LO60238 219 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 KIF5CO60282 957 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 EIF3JO75822 258 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 LETM1O95202 739 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 PFKMP08237 780 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 HOXA7P31268 230 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 MTHFRP42898 656 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 BTDP43251 543 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 STAT2P52630 851 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RPL10AP62906 217 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 IRX4P78413 519 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 PLCB3Q01970 1234 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 USP4Q13107 963 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 STRIP1Q5VSL9 837 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 PIAS4Q8N2W9 510 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 RSPH1Q8WYR4 309 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 SLITRK1Q96PX8 696 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 MTG1Q9BT17 334 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 PPP1R12CQ9BZL4 782 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 FAM117AQ9C073 453 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 NEUROD4Q9HD90 331 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 POLMQ9NP87 494 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 PRDM10Q9NQV6 1147 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 SBNO1A3KN83 1393 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ANKARQ7Z5J8 1434 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 KDM5DQ9BY66 1539 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 IRF6O14896 467 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms