RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 CABP7Q86V35 215 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 MRPL44Q9H9J2 332 aaKnown RBP6.59□□□□□ -1.35
VPS13B-203ENST00000358544 PAGE5Q96GU1 130 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 SEC16BQ96JE7 1060 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 LRGUKQ96M69 825 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 ANKRD27Q96NW4 1050 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 TRMT112Q9UI30 125 aaKnown RBP6.59□□□□□ -1.35
VPS13B-203ENST00000358544 FBXL5Q9UKA1 691 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 GPAA1O43292 621 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 DKC1O60832 514 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS13B-203ENST00000358544 KLC1Q07866 573 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 IQCB1Q15051 598 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 SH2D3CQ8N5H7 860 aa6.59□□□□□ -1.35
VPS13B-203ENST00000358544 IFNB1P01574 187 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 NT5C3AQ9H0P0 336 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 PFDN4Q9NQP4 134 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 GYG2O15488 501 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 SNRPA1P09661 255 aaKnown RBP6.59□□□□□ -1.36
VPS13B-203ENST00000358544 ICA1Q05084 483 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 CAPN12Q6ZSI9 719 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 TRPM8Q7Z2W7 1104 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 MIEF2Q96C03 454 aa6.59□□□□□ -1.36
VPS13B-203ENST00000358544 HMGB2P26583 209 aaKnown RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 LETM2Q2VYF4 491 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 HERC4Q5GLZ8 1057 aaPredicted RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 RESP18Q5W5W9 173 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 ABCA10Q8WWZ4 1543 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 ARL1P40616 181 aaPredicted RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 PAPOLAP51003 745 aaKnown RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 BZW1Q7L1Q6 419 aaKnown RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 SIRT2Q8IXJ6 389 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 CATSPER2Q96P56 530 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 A0A1W2PP64 1363 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 TMCC1O94876 653 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 ESCO1Q5FWF5 840 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 SLF2Q8IX21 1173 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 PPARGC1AQ9UBK2 798 aaKnown RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 TSPY3P0CV98 308 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 TSPY8P0CW00 308 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 JADE1Q6IE81 842 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 LRRN4CLQ8ND94 238 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 DBNDD2Q9BQY9 259 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 AP1M1Q9BXS5 423 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 LZTS1Q9Y250 596 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 DNAJC6O75061 913 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 IL13P35225 146 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 COPS6Q7L5N1 327 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 KIFC2Q96AC6 838 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 FOXO3O43524 673 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 DAB2IPQ5VWQ8 1189 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 SUCLG2Q96I99 432 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 ZBTB3Q9H5J0 574 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 CYTH2Q99418 400 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 EHD2Q9NZN4 543 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 USP15Q9Y4E8 981 aaPredicted RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 MT-ND3P03897 115 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 NEK2P51955 445 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 YWHAGP61981 247 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 CTDSPL2Q05D32 466 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 TRAIPQ9BWF2 469 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 SH2D4AQ9H788 454 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 A0A1B0GTH6 734 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 ARMCX6Q7L4S7 300 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 OTUD6AQ7L8S5 288 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 CLMNQ96JQ2 1002 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 EXOC1LA0A1B0GW35 172 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 PLS3P13797 630 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 CCT6BQ92526 530 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 ATP2A3Q93084 1043 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 SIKE1Q9BRV8 207 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 TRIM55Q9BYV6 548 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 CHMP2BQ9UQN3 213 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 STAT1P42224 750 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 PLS1Q14651 629 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 NRBF2Q96F24 287 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 TRIM56Q9BRZ2 755 aaKnown RBP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13B-203ENST00000358544 IFT122Q9HBG6 1241 aa6.58□□□□□ -1.36
VPS13B-203ENST00000358544 hCG_1642624A0A1W2PR95 340 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 GSTA2P09210 222 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 NONOQ15233 471 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS13B-203ENST00000358544 SMYD4Q8IYR2 804 aaPredicted RBP6.57□□□□□ -1.36
VPS13B-203ENST00000358544 CUEDC2Q9H467 287 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 C10orf88Q9H8K7 445 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 ARMCX3Q9UH62 379 aaPredicted RBP6.57□□□□□ -1.36
VPS13B-203ENST00000358544 TTC3P53804 2025 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 LRRIQ3A6PVS8 624 aaPredicted RBP6.57□□□□□ -1.36
VPS13B-203ENST00000358544 ZBBXA8MT70 800 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 TCP11X1B4DZS4 312 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 PALMO75781 387 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 NQO1P15559 274 aaKnown RBP6.57□□□□□ -1.36
VPS13B-203ENST00000358544 LMNB2Q03252 620 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 AP1B1Q10567 949 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 AGBL2Q5U5Z8 902 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 ANO5Q75V66 913 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 ZNF589Q86UQ0 364 aaPredicted RBP6.57□□□□□ -1.36
VPS13B-203ENST00000358544 TAF1DQ9H5J8 278 aaPredicted RBP6.57□□□□□ -1.36
VPS13B-203ENST00000358544 GID8Q9NWU2 228 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 C15orf41Q9Y2V0 281 aa6.57□□□□□ -1.36
VPS13B-203ENST00000358544 SKAP2O75563 359 aaPredicted RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms