RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 KCNJ14Q9UNX9 436 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 SUPT20HL2P0C7V6 817 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 FAM20AQ96MK3 541 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 ABHD16BQ9H3Z7 469 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 RTEL1Q9NZ71 1219 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 BRPF3Q9ULD4 1205 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 TXKP42681 527 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 UBE2SQ16763 222 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 SV2BQ7L1I2 683 aa10.33□□□□□ -0.76
UPF2-202ENST00000357604 F13A1P00488 732 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 TPM1P09493 284 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 EEPD1Q7L9B9 569 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 CLEC10AQ8IUN9 316 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 FBXL16Q8N461 479 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 GLT1D1Q96MS3 346 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 ZNF302Q9NR11 478 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 LRFN2Q9ULH4 789 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 hCG_1642624A0A1W2PR95 340 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 WDR64B1ANS9 1081 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 INF2Q27J81 1249 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 SYCP3Q8IZU3 236 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 DAGLBQ8NCG7 672 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 AK8Q96MA6 479 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 EXOC1Q9NV70 894 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 MORF4L1Q9UBU8 362 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 MYCP01106 439 aaPredicted RBP10.32□□□□□ -0.76
UPF2-202ENST00000357604 NR3C2P08235 984 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 STAG2Q8N3U4 1231 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 TBCKQ8TEA7 893 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 INO80BQ9C086 356 aaPredicted RBP10.32□□□□□ -0.76
UPF2-202ENST00000357604 RNF208Q9H0X6 261 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 SMARCAD1Q9H4L7 1026 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 PPME1Q9Y570 386 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 PPP1R2P41236 205 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 SEC23AQ15436 765 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 PCNX4Q63HM2 1172 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 STOX1Q6ZVD7 989 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 ZNF710Q8N1W2 664 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 RIOX1Q9H6W3 641 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 IL17RBQ9NRM6 502 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 SLC9A2Q9UBY0 812 aa10.32□□□□□ -0.76
UPF2-202ENST00000357604 MYH2Q9UKX2 1941 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 IGKV6D-41A0A0C4DH26 115 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 RRN3P2A6NIE6 340 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 ATP2A1O14983 1001 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 CTAGE5O15320 804 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 KIF4AO95239 1232 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 CCDC65Q8IXS2 484 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 SMAP1Q8IYB5 467 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 CNKSR2Q8WXI2 1034 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 MTG1Q9BT17 334 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 MAGEF1Q9HAY2 307 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 PCDHA12Q9UN75 941 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 TOB2Q14106 344 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 ARMCX2Q7L311 632 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 CREBRFQ8IUR6 639 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 NSUN7Q8NE18 718 aaKnown RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 SYNGAP1Q96PV0 1343 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 SPTLC2O15270 562 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 ALDH5A1P51649 535 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 POLGP54098 1239 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 ANTXR2P58335 489 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 BFSP2Q13515 415 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 CST9Q5W186 159 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 ZNF467Q7Z7K2 595 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 FERMT3Q86UX7 667 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 SRBD1Q8N5C6 995 aaKnown RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 SNX29Q8TEQ0 813 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 TINF2Q9BSI4 451 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 PXMP2Q9NR77 195 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 SRRDQ9UH36 339 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 SEPT9Q9UHD8 586 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 TBX3O15119 743 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 C6orf222P0C671 652 aaPredicted RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 LONP1P36776 959 aaKnown RBP10.31□□□□□ -0.76
UPF2-202ENST00000357604 LBX1P52954 281 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 METTL13Q8N6R0 699 aa10.31□□□□□ -0.76
UPF2-202ENST00000357604 GOLGA6L19H0YKK7 550 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 TGFB3P10600 412 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 ZSCAN20P17040 1043 aaPredicted RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 ACVR2BQ13705 512 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 FBXO46Q6PJ61 603 aaPredicted RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 PRDM10Q9NQV6 1147 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 CUTAO60888 179 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 LIG1P18858 919 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 IBSPP21815 317 aaPredicted RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 FAM43AQ8N2R8 423 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 DPF3Q92784 378 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 JPH1Q9HDC5 661 aaPredicted RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 CNTNAP5Q8WYK1 1306 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 DYNC1LI2O43237 492 aaPredicted RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 PRKCSHP14314 528 aaPredicted RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 ARHGAP4P98171 946 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 TSR1Q2NL82 804 aaKnown RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 ANO1Q5XXA6 986 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 ELMSAN1Q6PJG2 1045 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 LBX2Q6XYB7 198 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 NECAB2Q7Z6G3 386 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 CNNM3Q8NE01 707 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms