RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ABHD14A-ACY1A0A1B0GW23 586 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 PLA2G6O60733 806 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 NBNO60934 754 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 PPP4R3BQ5MIZ7 849 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 RNF207Q6ZRF8 634 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 CHST3Q7LGC8 479 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 SIRT2Q8IXJ6 389 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 KBTBD3Q8NAB2 608 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 ANKS1AQ92625 1134 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 IPO9Q96P70 1041 aaKnown RBP13.2□□□□□ -0.3
RTN3-204ENST00000354497 NAPBQ9H115 298 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 KCNH6Q9H252 994 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 CIZ1Q9ULV3 898 aaPredicted RBP13.2□□□□□ -0.3
RTN3-204ENST00000354497 FAM50BQ9Y247 325 aa13.2□□□□□ -0.3
RTN3-204ENST00000354497 FRMPD2Q68DX3 1309 aaPredicted RBP13.19□□□□□ -0.3
RTN3-204ENST00000354497 PATL2C9JE40 543 aaKnown RBP13.19□□□□□ -0.3
RTN3-204ENST00000354497 NMT2O60551 498 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 CKBP12277 381 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 PPARAQ07869 468 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 GPNMBQ14956 572 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 TIGD5Q53EQ6 642 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 SYDE2Q5VT97 1194 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 TTBK2Q6IQ55 1244 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 HFE2Q6ZVN8 426 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 AFG1LQ8WV93 481 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 DHX38Q92620 1227 aaKnown RBP13.19□□□□□ -0.3
RTN3-204ENST00000354497 MRPL38Q96DV4 380 aaKnown RBP13.19□□□□□ -0.3
RTN3-204ENST00000354497 KIF12Q96FN5 646 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 ALG1Q9BT22 464 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 LRRCC1Q9C099 1032 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 RANBP17Q9H2T7 1088 aaKnown RBP13.19□□□□□ -0.3
RTN3-204ENST00000354497 GPCPD1Q9NPB8 672 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 CTNNA3Q9UI47 895 aa13.19□□□□□ -0.3
RTN3-204ENST00000354497 LOC102724159A0A0B4J2E5 919 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 EFCAB14O75071 495 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 ARIH2O95376 493 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 PARNO95453 639 aaKnown RBP13.18□□□□□ -0.3
RTN3-204ENST00000354497 AMHP03971 560 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 PWP2Q15269 919 aaKnown RBP13.18□□□□□ -0.3
RTN3-204ENST00000354497 TCEAL5Q5H9L2 206 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 TSHZ3Q63HK5 1081 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.18□□□□□ -0.39e-7■■■■□ 25.5
RTN3-204ENST00000354497 MYOCDQ8IZQ8 938 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 C7orf31Q8N865 590 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 NEK9Q8TD19 979 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 DCAF4Q8WV16 495 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 MFSD14AQ96MC6 490 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 ECHDC1Q9NTX5 307 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 CLDND1Q9NY35 253 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 INSL6Q9Y581 213 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 PIEZO1Q92508 2521 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 SCN10AQ9Y5Y9 1956 aa13.18□□□□□ -0.3
RTN3-204ENST00000354497 B4DLN1 442 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 RANBP6O60518 1105 aaKnown RBP13.17□□□□□ -0.3
RTN3-204ENST00000354497 CXCL10P02778 98 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 ZFYP08048 801 aaPredicted RBP13.17□□□□□ -0.3
RTN3-204ENST00000354497 MMP3P08254 477 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 MRPL12P52815 198 aaKnown RBP13.17□□□□□ -0.3
RTN3-204ENST00000354497 ZP2Q05996 745 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 CTDSPL2Q05D32 466 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 CLUL1Q15846 466 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 SEPT14Q6ZU15 432 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 BANK1Q8NDB2 785 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 CTAGE1Q96RT6 745 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 SEC62Q99442 399 aaKnown RBP13.17□□□□□ -0.3
RTN3-204ENST00000354497 PHOX2BQ99453 314 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 INCENPQ9NQS7 918 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 PPP4R2Q9NY27 417 aa13.17□□□□□ -0.3
RTN3-204ENST00000354497 SIP14410 1827 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 TET1Q8NFU7 2136 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 POTEB3A0JP26 581 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 GALR2O43603 387 aaPredicted RBP13.16□□□□□ -0.3
RTN3-204ENST00000354497 GH1P01241 217 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 CASTP20810 708 aaKnown RBP13.16□□□□□ -0.3
RTN3-204ENST00000354497 RPS6P62753 249 aaKnown RBP13.16□□□□□ -0.3
RTN3-204ENST00000354497 GPM6BQ13491 265 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 LY6KQ17RY6 165 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 EPC2Q52LR7 807 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 ZNF618Q5T7W0 954 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 POTEBQ6S5H4 581 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 CLEC4DQ8WXI8 215 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 PABPC5Q96DU9 382 aaKnown RBP13.16□□□□□ -0.3
RTN3-204ENST00000354497 GPATCH3Q96I76 525 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 UPF3BQ9BZI7 483 aaKnown RBP13.16□□□□□ -0.3
RTN3-204ENST00000354497 IL17RBQ9NRM6 502 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 TOMM22Q9NS69 142 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 HDAC6Q9UBN7 1215 aa13.16□□□□□ -0.3
RTN3-204ENST00000354497 MAP3K13O43283 966 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 LGR5O75473 907 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 CSPG5O95196 566 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 PYGBP11216 843 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 PSEN2P49810 448 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 USH1GQ495M9 461 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 SESTD1Q86VW0 696 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 ADHFE1Q8IWW8 467 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 DNERQ8NFT8 737 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 KAT2BQ92831 832 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 YME1L1Q96TA2 773 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 PRKAG3Q9UGI9 489 aa13.15□□□□□ -0.3
RTN3-204ENST00000354497 GTF2IRD1Q9UHL9 959 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms