RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 P2RX5Q93086 422 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 CLIC2O15247 247 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 LPXNO60711 386 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 KLHL7Q8IXQ5 586 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 SLC17A8Q8NDX2 589 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 MAN1B1Q9UKM7 699 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 WDR19Q8NEZ3 1342 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 AKR1B1P15121 316 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 FERP16591 822 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 CDC27P30260 824 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 AP3B2Q13367 1082 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 EXOC3L4Q17RC7 722 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 CCDC14Q49A88 953 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 SNRNP48Q6IEG0 339 aaKnown RBP16.36■□□□□ 0.21
COL17A1-201ENST00000353479 PDXDC2PQ6P474 469 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 ACCSQ96QU6 501 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 DAGLAQ9Y4D2 1042 aa16.36■□□□□ 0.21
COL17A1-201ENST00000353479 NCOA3Q9Y6Q9 1424 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 F5H6K3 240 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 GAS8O95995 478 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 MYCP01106 439 aaPredicted RBP16.35■□□□□ 0.21
COL17A1-201ENST00000353479 PDE6CP51160 858 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 MYL7Q01449 175 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 KLRC3Q07444 240 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 GRM4Q14833 912 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 ZNF658Q5TYW1 1059 aaPredicted RBP16.35■□□□□ 0.21
COL17A1-201ENST00000353479 DHTKD1Q96HY7 919 aaPredicted RBP16.35■□□□□ 0.21
COL17A1-201ENST00000353479 PCIF1Q9H4Z3 704 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 MST1RQ04912 1400 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 CFAP58Q5T655 872 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 PPP1R16BQ96T49 567 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 SUGT1Q9Y2Z0 365 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 EZH2Q15910 746 aaKnown RBP16.35■□□□□ 0.21
COL17A1-201ENST00000353479 STRIP1Q5VSL9 837 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 MXD3Q9BW11 206 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 UTP11Q9Y3A2 253 aaKnown RBP16.35■□□□□ 0.21
COL17A1-201ENST00000353479 USP42Q9H9J4 1324 aaKnown RBP16.35■□□□□ 0.21
COL17A1-201ENST00000353479 PPP1R21Q6ZMI0 780 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 RSPH3Q86UC2 560 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 RMDN3Q96TC7 470 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 DCCP43146 1447 aa16.35■□□□□ 0.21
COL17A1-201ENST00000353479 UBN2Q6ZU65 1347 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 MARK3P27448 753 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 C11orf57Q6ZUT1 292 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 MICALL2Q8IY33 904 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 ACTN4O43707 911 aaKnown RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 TUBBP07437 444 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 TUBB2AQ13885 445 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 UAP1Q16222 522 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 DNAJC21Q5F1R6 531 aaKnown RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 INTS5Q6P9B9 1019 aaKnown RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 DAAM2Q86T65 1068 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 GPR161Q8N6U8 529 aaKnown RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 OTUD5Q96G74 571 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 TUBB2BQ9BVA1 445 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 ERO1AQ96HE7 468 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 RPS6KC1Q96S38 1066 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 STK36Q9NRP7 1315 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 PXDNLA1KZ92 1463 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 CHGBP05060 677 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 PSMC2P35998 433 aaKnown RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 ARL6IP4Q66PJ3 421 aaKnown RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 OXER1Q8TDS5 423 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 TRERF1Q96PN7 1200 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 ASIC3Q9UHC3 531 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 C12orf60Q5U649 245 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 FAM186BQ8IYM0 893 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 NLRP7Q8WX94 980 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 ATRIPQ8WXE1 791 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 ZBTB12Q9Y330 459 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-201ENST00000353479 MEGF6O75095 1541 aa16.34■□□□□ 0.21
COL17A1-201ENST00000353479 STK10O94804 968 aaKnown RBP16.33■□□□□ 0.21
COL17A1-201ENST00000353479 PAGE5Q96GU1 130 aa16.33■□□□□ 0.21
COL17A1-201ENST00000353479 KCNK9Q9NPC2 374 aa16.33■□□□□ 0.21
COL17A1-201ENST00000353479 ZNF215Q9UL58 517 aaPredicted RBP16.33■□□□□ 0.21
COL17A1-201ENST00000353479 ATP2C2O75185 946 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 PTPROQ16827 1216 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 RIOK1Q9BRS2 568 aaKnown RBP16.33■□□□□ 0.2
COL17A1-201ENST00000353479 PODXL2Q9NZ53 605 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 MRFAP1L1Q96HT8 127 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 PARVGQ9HBI0 331 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 TMEM260Q9NX78 707 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 PARP2Q9UGN5 583 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 AMFRQ9UKV5 643 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 ORC4O43929 436 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 LACTBP83111 547 aaPredicted RBP16.33■□□□□ 0.2
COL17A1-201ENST00000353479 IFRD2Q12894 506 aaPredicted RBP16.33■□□□□ 0.2
COL17A1-201ENST00000353479 ADGRF4Q8IZF3 695 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 NEDD1Q8NHV4 660 aa16.33■□□□□ 0.2
COL17A1-201ENST00000353479 ZEB2O60315 1214 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 MRRFQ96E11 262 aaKnown RBP16.32■□□□□ 0.2
COL17A1-201ENST00000353479 BHMT2Q9H2M3 363 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 RIC8AQ9NPQ8 531 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 HESX1Q9UBX0 185 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 HERC5Q9UII4 1024 aaKnown RBP16.32■□□□□ 0.2
COL17A1-201ENST00000353479 TSKSQ9UJT2 592 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 BUB1O43683 1085 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 MTMR1Q13613 665 aa16.32■□□□□ 0.2
COL17A1-201ENST00000353479 NSRP1Q9H0G5 558 aaKnown RBP16.32■□□□□ 0.2
COL17A1-201ENST00000353479 EMILIN3Q9NT22 766 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms