RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CD302Q8IX05 232 aa17.6■□□□□ 0.41
HMGA1-202ENST00000347617 TNFRSF25Q93038 417 aa17.6■□□□□ 0.41
HMGA1-202ENST00000347617 ZKSCAN3Q9BRR0 538 aa17.6■□□□□ 0.41
HMGA1-202ENST00000347617 TTYH3Q9C0H2 523 aa17.6■□□□□ 0.41
HMGA1-202ENST00000347617 JADE2Q9NQC1 790 aa17.6■□□□□ 0.41
HMGA1-202ENST00000347617 EXOC1Q9NV70 894 aa17.6■□□□□ 0.41
HMGA1-202ENST00000347617 RNF216Q9NWF9 866 aaPredicted RBP17.6■□□□□ 0.41
HMGA1-202ENST00000347617 ANKRD65E5RJM6 399 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 NDUFAB1O14561 156 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 PSMA7O14818 248 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 MYBL2P10244 700 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 DOK7Q18PE1 504 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 RTKN2Q8IZC4 609 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 CERS5Q8N5B7 392 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 TTLL6Q8N841 843 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 C3orf20Q8ND61 904 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 DHTKD1Q96HY7 919 aaPredicted RBP17.59■□□□□ 0.41
HMGA1-202ENST00000347617 ALS2CR12Q96Q35 445 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 NHEJ1Q9H9Q4 299 aaPredicted RBP17.59■□□□□ 0.41
HMGA1-202ENST00000347617 MAGEF1Q9HAY2 307 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 STIM2Q9P246 746 aa17.59■□□□□ 0.41
HMGA1-202ENST00000347617 TMCO5BA8MYB1 307 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 SRGAP2O75044 1071 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 CYP2D6P10635 497 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 PAFAH1B1P43034 410 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 TROAPQ12815 778 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 IRF2BP1Q8IU81 584 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 CREG2Q8IUH2 290 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 MREGQ8N565 214 aa17.58■□□□□ 0.41
HMGA1-202ENST00000347617 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.58■□□□□ 0.411e-6■■■■■ 56.2
HMGA1-202ENST00000347617 CCDC47Q96A33 483 aaKnown RBP17.58■□□□□ 0.41
HMGA1-202ENST00000347617 NAV1Q8NEY1 1877 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 FLT1P17948 1338 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 BICDL2A1A5D9 508 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 TSPY2A6NKD2 308 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 SMIM22K7EJ46 135 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 PDE2AO00408 941 aaPredicted RBP17.58■□□□□ 0.4
HMGA1-202ENST00000347617 CCDC172P0C7W6 258 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 CASP1P29466 404 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 HNRNPH3P31942 346 aaKnown RBP17.58■□□□□ 0.4
HMGA1-202ENST00000347617 PRCPP42785 496 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 FNTAP49354 379 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 C2orf54Q08AI8 447 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 KCNV1Q6PIU1 500 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 C16orf86Q6ZW13 317 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 IFT20Q8IY31 132 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 ZNF444Q8N0Y2 327 aaPredicted RBP17.58■□□□□ 0.4
HMGA1-202ENST00000347617 PSMD1Q99460 953 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 MKNK2Q9HBH9 465 aa17.58■□□□□ 0.4
HMGA1-202ENST00000347617 CDK5RAP2Q96SN8 1893 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 H0YHG0 523 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 CHUKO15111 745 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 NPM3O75607 178 aaKnown RBP17.57■□□□□ 0.4
HMGA1-202ENST00000347617 PRDM1O75626 825 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 HOXA7P31268 230 aaPredicted RBP17.57■□□□□ 0.4
HMGA1-202ENST00000347617 PTGDRQ13258 359 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 PKN1Q16512 942 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 SOGA3Q5TF21 947 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 SPATA4Q8NEY3 305 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 NUP133Q8WUM0 1156 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 TEKT1Q969V4 418 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 EPN3Q9H201 632 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 DONSONQ9NYP3 566 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 FOCADQ5VW36 1801 aa17.57■□□□□ 0.4
HMGA1-202ENST00000347617 KIF13BQ9NQT8 1826 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 DDX60LQ5H9U9 1706 aaKnown RBP17.56■□□□□ 0.4
HMGA1-202ENST00000347617 USP17L3A6NCW0 530 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 USP17L4A6NCW7 530 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 LCA5LO95447 670 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 TRIM21P19474 475 aaKnown RBP17.56■□□□□ 0.4
HMGA1-202ENST00000347617 TGFB2P61812 414 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 DACT2Q5SW24 774 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 CCDC181Q5TID7 509 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 USP17L1Q7RTZ2 530 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 CCDC50Q8IVM0 306 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 MAPKAPK5Q8IW41 473 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 ZBTB9Q96C00 473 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 ZDHHC15Q96MV8 337 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 ERGIC2Q96RQ1 377 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 CUEDC2Q9H467 287 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 VPS54Q9P1Q0 977 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 CAPN7Q9Y6W3 813 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 ECE2O60344 883 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 RDXP35241 583 aaKnown RBP17.56■□□□□ 0.4
HMGA1-202ENST00000347617 TFAP4Q01664 338 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 FUT2Q10981 343 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 PAK2Q13177 524 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 ZNF174Q15697 407 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 ARFGAP2Q8N6H7 521 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 GPATCH11Q8N954 259 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 EIF1ADQ8N9N8 165 aaKnown RBP17.56■□□□□ 0.4
HMGA1-202ENST00000347617 TRIM47Q96LD4 638 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 BLZF1Q9H2G9 400 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 SH2D4AQ9H788 454 aa17.56■□□□□ 0.4
HMGA1-202ENST00000347617 ACTR5Q9H9F9 607 aaPredicted RBP17.56■□□□□ 0.4
HMGA1-202ENST00000347617 MYO3BQ8WXR4 1341 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 C21orf2O43822 256 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 ZMYND10O75800 440 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 RHOBTB3O94955 611 aa17.55■□□□□ 0.4
HMGA1-202ENST00000347617 KCNA3P22001 575 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms