RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 KIF23Q02241 960 aaPredicted RBP11.22□□□□□ -0.61
USP54-201ENST00000339859 NBPF9Q3BBW0 867 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 CHADLQ6NUI6 762 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 MTMR6Q9Y217 621 aa11.22□□□□□ -0.61
USP54-201ENST00000339859 BRD1O95696 1058 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 MCM3P25205 808 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 POMGNT1Q8WZA1 660 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 CCDC42Q96M95 316 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 FAM20AQ96MK3 541 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 SYT17Q9BSW7 474 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 SELENOOQ9BVL4 669 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 SPZ1Q9BXG8 430 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 RTFDC1Q9BY42 306 aaPredicted RBP11.21□□□□□ -0.61
USP54-201ENST00000339859 INCENPQ9NQS7 918 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 LUC7L2Q9Y383 392 aaKnown RBP11.21□□□□□ -0.61
USP54-201ENST00000339859 FAM173BQ6P4H8 233 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 TSGA10Q9BZW7 698 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 MAPK8IP1Q9UQF2 711 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 MAPK4P31152 587 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 DNA2P51530 1060 aa11.21□□□□□ -0.61
USP54-201ENST00000339859 ZKSCAN4Q969J2 545 aaPredicted RBP11.21□□□□□ -0.61
USP54-201ENST00000339859 MYL1P05976 194 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 RASA1P20936 1047 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 KMT5BQ4FZB7 885 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 ARL6IP4Q66PJ3 421 aaKnown RBP11.21□□□□□ -0.62
USP54-201ENST00000339859 USP28Q96RU2 1077 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 MTIF3Q9H2K0 278 aaKnown RBP11.21□□□□□ -0.62
USP54-201ENST00000339859 ANAPC4Q9UJX5 808 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 CLIC4Q9Y696 253 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 PABPN1LA6NDY0 278 aaKnown RBP11.21□□□□□ -0.62
USP54-201ENST00000339859 SURF1Q15526 300 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 MAP1SQ66K74 1059 aaPredicted RBP11.21□□□□□ -0.62
USP54-201ENST00000339859 CNGA4Q8IV77 575 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 CSRNP2Q9H175 543 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 POLR3EQ9NVU0 708 aa11.21□□□□□ -0.62
USP54-201ENST00000339859 TMEM110-MUSTN1A8MSY1 372 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 HNRNPDLO14979 420 aaKnown RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 RPN1P04843 607 aaKnown RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 CASP7P55210 303 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 FAM26FQ5R3K3 315 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 TRIML1Q8N9V2 468 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 MAK16Q9BXY0 300 aaKnown RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 METTL14Q9HCE5 456 aaKnown RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 HAUS2Q9NVX0 235 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 ATP8B3O60423 1300 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 ZBTB24O43167 697 aaPredicted RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 GH1P01241 217 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 RARBP10826 455 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 DACT2Q5SW24 774 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 DDX12PQ92771 950 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 ALDH8A1Q9H2A2 487 aaPredicted RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 BCL2L12Q9HB09 334 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 GPRC5DQ9NZD1 345 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 BRPF3Q9ULD4 1205 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 CYP2B6P20813 491 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 SGMS1Q86VZ5 419 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 TRMT44Q8IYL2 757 aaKnown RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 PEAK1Q9H792 1746 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 ONECUT3O60422 494 aaPredicted RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 XRCC5P13010 732 aaKnown RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 PHKA2P46019 1235 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 SLC39A14Q15043 492 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 SKIDA1Q1XH10 827 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 PLEKHH3Q7Z736 793 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 CDCA5Q96FF9 252 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 MMS19Q96T76 1030 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 LBHD1Q9BQE6 289 aaPredicted RBP11.2□□□□□ -0.62
USP54-201ENST00000339859 NUB1Q9Y5A7 615 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 PNOCQ13519 176 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 FKBP1CQ5VVH2 108 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 ERO1AQ96HE7 468 aa11.2□□□□□ -0.62
USP54-201ENST00000339859 CXCL11O14625 94 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 USP11P51784 963 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 BACE1P56817 501 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 URGCPQ8TCY9 931 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 TACC1O75410 805 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 ARHGAP4P98171 946 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 TNFAIP2Q03169 654 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 GLIS2Q9BZE0 524 aaPredicted RBP11.19□□□□□ -0.62
USP54-201ENST00000339859 FAM49AQ9H0Q0 323 aaPredicted RBP11.19□□□□□ -0.62
USP54-201ENST00000339859 C1orf112Q9NSG2 853 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 TXNP10599 105 aaKnown RBP11.19□□□□□ -0.62
USP54-201ENST00000339859 PIK3CAP42336 1068 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 TNNC1P63316 161 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 KRBA2Q6ZNG9 492 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 MAP3K14Q99558 947 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 CD19P15391 556 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 GJC1P36383 396 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 TSGA10IPQ3SY00 556 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 CCDC50Q8IVM0 306 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 MCPH1Q8NEM0 835 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 MTRQ99707 1265 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 ARID3AQ99856 593 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 SCAF8Q9UPN6 1271 aaKnown RBP11.19□□□□□ -0.62
USP54-201ENST00000339859 GSTTP1A0A1W2PQM5 241 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 DENND3A2RUS2 1198 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 KRT9P35527 623 aa11.19□□□□□ -0.62
USP54-201ENST00000339859 KARSQ15046 597 aaKnown RBP11.19□□□□□ -0.62
USP54-201ENST00000339859 NBPF12Q5TAG4 269 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms