RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 GOLGA8CPA6NN73 597 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 ZBBXA8MT70 800 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 HEXIM1O94992 359 aaKnown RBP13.71□□□□□ -0.21
SDC3-201ENST00000336798 ZSCAN20P17040 1043 aaPredicted RBP13.71□□□□□ -0.21
SDC3-201ENST00000336798 MAPK4P31152 587 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 MTERF2Q49AM1 385 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 SLC24A3Q9HC58 644 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 CPP00450 1065 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 FGAP02671 866 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 H2AFZP0C0S5 128 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 IRX4P78413 519 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 H2AFVQ71UI9 128 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 OSBPP22059 807 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 PHKA1P46020 1223 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 BASP1P80723 227 aaKnown RBP13.71□□□□□ -0.21
SDC3-201ENST00000336798 SZRD1Q7Z422 152 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 GRAMD1CQ8IYS0 662 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 ZMAT2Q96NC0 199 aaKnown RBP13.71□□□□□ -0.21
SDC3-201ENST00000336798 PUS3Q9BZE2 481 aaKnown RBP13.71□□□□□ -0.21
SDC3-201ENST00000336798 PARD3Q8TEW0 1356 aa13.71□□□□□ -0.21
SDC3-201ENST00000336798 HIP1RO75146 1068 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 RAD17O75943 681 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 KRT1P04264 644 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 SOX5P35711 763 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 PASKQ96RG2 1323 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 GOLGA8KD6RF30 607 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 DARS2Q6PI48 645 aaKnown RBP13.71□□□□□ -0.22
SDC3-201ENST00000336798 MAGOHBQ96A72 148 aaKnown RBP13.71□□□□□ -0.22
SDC3-201ENST00000336798 NT5C1BQ96P26 610 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 CALN1Q9BXU9 219 aa13.71□□□□□ -0.22
SDC3-201ENST00000336798 AOX1Q06278 1338 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 PPFIA2O75334 1257 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 TOM1L1O75674 476 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 TRPA1O75762 1119 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 APOEP02649 317 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 KCNA4P22459 653 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 SLCO1A2P46721 670 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 CDO1Q16878 200 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 KCTD6Q8NC69 237 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 FAF1Q9UNN5 650 aaPredicted RBP13.7□□□□□ -0.22
SDC3-201ENST00000336798 ITM2BQ9Y287 266 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 MYO1FO00160 1098 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 RPSAP08865 295 aaKnown RBP13.7□□□□□ -0.22
SDC3-201ENST00000336798 THOC5Q13769 683 aaKnown RBP13.7□□□□□ -0.22
SDC3-201ENST00000336798 ZMYM3Q14202 1370 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 SRGAP2BP0DMP2 458 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 EPHB1P54762 984 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 MIS18BP1Q6P0N0 1132 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 SLITRK6Q9H5Y7 841 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 INTUQ9ULD6 942 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 ZNF804BA4D1E1 1349 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 PLEKHG3A1L390 1219 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 SRGAP2CP0DJJ0 459 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 NR2F2P24468 414 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 CASP14P31944 242 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 DDIT3P35638 169 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 STX1BP61266 288 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 C2orf54Q08AI8 447 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 MAP7D3Q8IWC1 876 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 BBS5Q8N3I7 341 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 COA7Q96BR5 231 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 CEP170P1Q96L14 293 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 PCDHA7Q9UN72 937 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 ATF5Q9Y2D1 282 aaPredicted RBP13.7□□□□□ -0.22
SDC3-201ENST00000336798 OR6B2Q6IFH4 312 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 KRT26Q7Z3Y9 468 aa13.7□□□□□ -0.22
SDC3-201ENST00000336798 DNAJC17Q9NVM6 304 aaKnown RBP13.7□□□□□ -0.22
SDC3-201ENST00000336798 TSR3Q9UJK0 312 aaKnown RBP13.7□□□□□ -0.22
SDC3-201ENST00000336798 DUOX2Q9NRD8 1548 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 CHL1O00533 1208 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 GTPBP6O43824 516 aaPredicted RBP13.69□□□□□ -0.22
SDC3-201ENST00000336798 BCAS4Q8TDM0 211 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 GOLGA8IPA6NC78 632 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 GOLGA8JA6NMD2 632 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 ZNF18P17022 549 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 TCP11X2Q5H9J9 407 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 SCYL3Q8IZE3 742 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 RETREG2Q8NC44 543 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 GPR101Q96P66 508 aaPredicted RBP13.69□□□□□ -0.22
SDC3-201ENST00000336798 A6NNZ2 444 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 H0YCG3 227 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 GFPT2O94808 682 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 TUBB8Q3ZCM7 444 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 ARHGEF18Q6ZSZ5 1173 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 HSPH1Q92598 858 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 SUFUQ9UMX1 484 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 M0R2C6 588 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 SEC31AO94979 1220 aaKnown RBP13.69□□□□□ -0.22
SDC3-201ENST00000336798 SPOPLQ6IQ16 392 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 RSBN1LQ6PCB5 846 aaPredicted RBP13.69□□□□□ -0.22
SDC3-201ENST00000336798 TRMT10CQ7L0Y3 403 aaKnown RBP13.69□□□□□ -0.22
SDC3-201ENST00000336798 SLC7A3Q8WY07 619 aa13.69□□□□□ -0.22
SDC3-201ENST00000336798 EAF2Q96CJ1 260 aaPredicted RBP13.69□□□□□ -0.22
SDC3-201ENST00000336798 MED23Q9ULK4 1368 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 CFLARO15519 480 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 CDC25AP30304 524 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 COPB1P53618 953 aaKnown RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 UBE2SQ16763 222 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 ZBTB38Q8NAP3 1195 aaPredicted RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 CCDC51Q96ER9 411 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms