RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 C16orf45Q96MC5 204 aaPredicted RBP7.58□□□□□ -1.2
SF3B1-201ENST00000335508 KIAA1586Q9HCI6 787 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 GCNT3O95395 438 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 RPN1P04843 607 aaKnown RBP7.58□□□□□ -1.2
SF3B1-201ENST00000335508 SLFNL1Q499Z3 407 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 CEP170P1Q96L14 293 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 TRIM6Q9C030 488 aaPredicted RBP7.58□□□□□ -1.2
SF3B1-201ENST00000335508 RBSNQ9H1K0 784 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 PSAPP07602 524 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 SSR1P43307 286 aaKnown RBP7.58□□□□□ -1.2
SF3B1-201ENST00000335508 TNNT3P45378 269 aaPredicted RBP7.58□□□□□ -1.2
SF3B1-201ENST00000335508 SURF1Q15526 300 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 USP17L6PQ6QN14 398 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 C3orf67Q6ZVT6 689 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 DAGLBQ8NCG7 672 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 SCFD2Q8WU76 684 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 KIAA1683Q9H0B3 1180 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 TRPC6Q9Y210 931 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 PCDHA10Q9Y5I2 948 aa7.58□□□□□ -1.2
SF3B1-201ENST00000335508 IPO5O00410 1097 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 MAP2P11137 1827 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 DMP1Q13316 513 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PPP2R5EQ16537 467 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 TMCO3Q6UWJ1 677 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 MYPNQ86TC9 1320 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PROM2Q8N271 834 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 TIPINQ9BVW5 301 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SYNCQ9H7C4 482 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 FMN2Q9NZ56 1722 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 KCND2Q9NZV8 630 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 CLIC4Q9Y696 253 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 BZW2Q9Y6E2 419 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 KNL1Q8NG31 2342 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 NRXN3Q9Y4C0 1643 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 QARSP47897 775 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 ADAM9Q13443 819 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SPDYE2Q495Y8 402 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 POTEAQ6S8J7 498 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 UNC13DQ70J99 1090 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 CAMKK2Q96RR4 588 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 VPS16Q9H269 839 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PCDHA6Q9UN73 950 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PCDHA8Q9Y5H6 950 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 KIAA0391O15091 583 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 POLGP54098 1239 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SNAPC2Q13487 334 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 ZNF827Q17R98 1081 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 HSP90AA4PQ58FG1 418 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SPECC1Q5M775 1068 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 GBP6Q6ZN66 633 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SRBD1Q8N5C6 995 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 NELFBQ8WX92 580 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 CTNNBL1Q8WYA6 563 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 P2RX5Q93086 422 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 NAP1L3Q99457 506 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SELENOOQ9BVL4 669 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 HOXD10P28358 340 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 DCAF17Q5H9S7 520 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SLFN12LQ6IEE8 588 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 APOBEC3HQ6NTF7 200 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PTF1AQ7RTS3 328 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 HOOK3Q86VS8 718 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 RPGRIP1Q96KN7 1286 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 CLIC6Q96NY7 704 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 IL25Q9H293 177 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 SUGCTQ9HAC7 445 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PRRC2BQ5JSZ5 2229 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 MYO9BQ13459 2157 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 CTNNA2P26232 953 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 RHBDL3P58872 404 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 MAN2A1Q16706 1144 aa7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PARK7Q99497 189 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 PUF60Q9UHX1 559 aaKnown RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 FEZ2Q9UHY8 353 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-201ENST00000335508 CTAGE15A4D2H0 777 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 STAM2O75886 525 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CTAGE8P0CG41 777 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CDC42EP1Q00587 391 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 KIAA0753Q2KHM9 967 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CTAGE6Q86UF2 777 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CTAGE4Q8IX94 777 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 OTUD5Q96G74 571 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 ZHX1Q9UKY1 873 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 MAPK8IP1Q9UQF2 711 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CETPP11597 493 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 MUTP22033 750 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 NR2F2P24468 414 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CCND2P30279 289 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 POLR2BP30876 1174 aaKnown RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 LIG4P49917 911 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 KLHL30Q0D2K2 578 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 TTLL4Q14679 1199 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 KCNB1Q14721 858 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CLUL1Q15846 466 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 CEP63Q96MT8 703 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 PHF20Q9BVI0 1012 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 RIOX1Q9H6W3 641 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 VIL1P09327 827 aaKnown RBP7.56□□□□□ -1.2
SF3B1-201ENST00000335508 FCER1AP12319 257 aa7.56□□□□□ -1.2
SF3B1-201ENST00000335508 KLRK1P26718 216 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms