RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 RAD21O60216 631 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 APBA3O96018 575 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 SLC1A4P43007 532 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 RBM5P52756 815 aaKnown RBP eCLIP16.23■□□□□ 0.19
TPM3-206ENST00000330188 ZBED6P86452 979 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 DMTNQ08495 405 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 USP17L24Q0WX57 530 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 FIGNQ5HY92 759 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 HYIQ5T013 277 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 TATDN1Q6P1N9 297 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 USP17L6PQ6QN14 398 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 TMCO3Q6UWJ1 677 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 SIAH1Q8IUQ4 282 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 NAP1L4Q99733 375 aaKnown RBP16.23■□□□□ 0.19
TPM3-206ENST00000330188 GLT8D2Q9H1C3 349 aa16.23■□□□□ 0.19
TPM3-206ENST00000330188 PNMA6AP0CW24 399 aaPredicted RBP16.22■□□□□ 0.19
TPM3-206ENST00000330188 IDEP14735 1019 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 HOXA7P31268 230 aaPredicted RBP16.22■□□□□ 0.19
TPM3-206ENST00000330188 CHMP4BP1P59074 171 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 HERVK_113P62684 666 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 PSMD2Q13200 908 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 CDC37Q16543 378 aaPredicted RBP16.22■□□□□ 0.19
TPM3-206ENST00000330188 CEP112Q8N8E3 955 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 DNAJC19Q96DA6 116 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 ZMYND15Q9H091 742 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 TRIM10Q9UDY6 481 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 PCDHA12Q9UN75 941 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 PCDHA1Q9Y5I3 950 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 MARCH6O60337 910 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 NPM3O75607 178 aaKnown RBP16.22■□□□□ 0.19
TPM3-206ENST00000330188 ABCB11O95342 1321 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 SEPT2Q15019 361 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 PARD6BQ9BYG5 372 aa16.22■□□□□ 0.19
TPM3-206ENST00000330188 KDM3AQ9Y4C1 1321 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 A0A1W2PQJ5 194 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 SEC31AO94979 1220 aaKnown RBP16.21■□□□□ 0.19
TPM3-206ENST00000330188 LRRC63Q05C16 580 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 VWA3BQ502W6 1294 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 FKBP15Q5T1M5 1219 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 STYK1Q6J9G0 422 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 GLIS3Q8NEA6 775 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 PCMTD1Q96MG8 357 aaPredicted RBP16.21■□□□□ 0.19
TPM3-206ENST00000330188 ANO3Q9BYT9 981 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 HAUS4Q9H6D7 363 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 ZSWIM4Q9H7M6 989 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 KCNMB3Q9NPA1 279 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 PUF60Q9UHX1 559 aaKnown RBP16.21■□□□□ 0.19
TPM3-206ENST00000330188 GUCA1BQ9UMX6 200 aa16.21■□□□□ 0.19
TPM3-206ENST00000330188 CYLC1P35663 651 aaPredicted RBP16.21■□□□□ 0.18
TPM3-206ENST00000330188 USP11P51784 963 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 ICA1Q05084 483 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 COASYQ13057 564 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 LRRC55Q6ZSA7 311 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 TMEM179Q6ZVK1 233 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 MBOAT7Q96N66 472 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 TRIM34Q9BYJ4 488 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 ZNHIT6Q9NWK9 470 aaKnown RBP16.21■□□□□ 0.18
TPM3-206ENST00000330188 SERPINA10Q9UK55 444 aa16.21■□□□□ 0.18
TPM3-206ENST00000330188 CYP3A7-CYP3A51PA0A087WV96 503 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 FGFR1OPO95684 399 aaKnown RBP16.2■□□□□ 0.18
TPM3-206ENST00000330188 CYP3A7P24462 503 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 AMPD2Q01433 879 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 GABPB1Q06547 395 aaPredicted RBP16.2■□□□□ 0.18
TPM3-206ENST00000330188 MAN2A1Q16706 1144 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 UTP14CQ5TAP6 766 aaKnown RBP16.2■□□□□ 0.18
TPM3-206ENST00000330188 CC2D1AQ6P1N0 951 aaPredicted RBP16.2■□□□□ 0.18
TPM3-206ENST00000330188 FOXR2Q6PJQ5 311 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 ZNF662Q6ZS27 426 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 CCDC170Q8IYT3 715 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 IQCDQ96DY2 449 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 NT5C3AQ9H0P0 336 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 NDST4Q9H3R1 872 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 NHEJ1Q9H9Q4 299 aaPredicted RBP16.2■□□□□ 0.18
TPM3-206ENST00000330188 ZNF219Q9P2Y4 722 aaPredicted RBP16.2■□□□□ 0.18
TPM3-206ENST00000330188 SIK3Q9Y2K2 1263 aa16.2■□□□□ 0.18
TPM3-206ENST00000330188 H0YIN7 160 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 MEIS2O14770 477 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 GDF11O95390 407 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 TFRCP02786 760 aaKnown RBP16.19■□□□□ 0.18
TPM3-206ENST00000330188 KRT83P78385 493 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 LRRC41Q15345 812 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 EIF3CLB5ME19 914 aaKnown RBP16.19■□□□□ 0.18
TPM3-206ENST00000330188 F5H6K3 240 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 CDK17Q00537 523 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 KLRC3Q07444 240 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 AP3B2Q13367 1082 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 WHAMMP3Q1A5X7 153 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 GMCL1P1Q8NEA9 526 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 CRYGNQ8WXF5 182 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 UIMC1Q96RL1 719 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 P2RX7Q99572 595 aaKnown RBP16.19■□□□□ 0.18
TPM3-206ENST00000330188 EIF3CQ99613 913 aaKnown RBP16.19■□□□□ 0.18
TPM3-206ENST00000330188 PANK4Q9NVE7 773 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 TFR2Q9UP52 801 aa16.19■□□□□ 0.18
TPM3-206ENST00000330188 ATRNL1Q5VV63 1379 aa16.18■□□□□ 0.18
TPM3-206ENST00000330188 POTEB3A0JP26 581 aa16.18■□□□□ 0.18
TPM3-206ENST00000330188 POTECB2RU33 542 aa16.18■□□□□ 0.18
TPM3-206ENST00000330188 E9PMD0 336 aa16.18■□□□□ 0.18
TPM3-206ENST00000330188 PSMD14O00487 310 aa16.18■□□□□ 0.18
TPM3-206ENST00000330188 ATP8B1O43520 1251 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 167.2 ms