RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PSTPIP2Q9H939 334 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 FKBP14Q9NWM8 211 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 VWA5AO00534 786 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 SURF6O75683 361 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 IST1P53990 364 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 SPIRE1Q08AE8 756 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 TCAIMQ8N3R3 496 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 PBXIP1Q96AQ6 731 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 HPS5Q9UPZ3 1129 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 RRP15Q9Y3B9 282 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 ARPC4-TTLL3A0A0A6YYG9 625 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 PSMA3P25788 255 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 PDHA2P29803 388 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 ELF1P32519 619 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 EIF2B2P49770 351 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 CRYMQ14894 314 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 CYTH1Q15438 398 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 INTS6LQ5JSJ4 861 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 BLOC1S2Q6QNY1 142 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 FAM47EQ6ZV65 393 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 GDPD2Q9HCC8 539 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 ABCG2Q9UNQ0 655 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 CCNB3Q8WWL7 1395 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 AXIN1O15169 862 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 SNX4O95219 450 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 PARP1P09874 1014 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 KLC1Q07866 573 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 KRT40Q6A162 431 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 GPIHBP1Q8IV16 184 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 REXO4Q9GZR2 422 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 CARD8Q9Y2G2 431 aa8.25□□□□□ -1.09
LIMCH1-201ENST00000313860 ZBTB24O43167 697 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF500O60304 480 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 CCNIQ14094 377 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TEX2Q8IWB9 1127 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 SUN3Q8TAQ9 357 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 LRRC39Q96DD0 335 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 PSMB7Q99436 277 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ANKRD2Q9GZV1 360 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 IARS2Q9NSE4 1012 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 GNL3LQ9NVN8 582 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 PDZRN3Q9UPQ7 1066 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 C2orf71A6NGG8 1288 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 APAF1O14727 1248 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 HNRNPRO43390 633 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 PIK3CAP42336 1068 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TRIM16LQ309B1 348 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 BNIPLQ7Z465 357 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 CDR2LQ86X02 465 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TMTC1Q8IUR5 882 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 LRRC8CQ8TDW0 803 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 GID8Q9NWU2 228 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ATP6V1HQ9UI12 483 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 RAB3GAP2Q9H2M9 1393 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 MUSKO15146 869 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 SPAG7O75391 227 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ATP2B4P23634 1241 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ZSWIM7Q19AV6 140 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ANO1Q5XXA6 986 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 IFNEQ86WN2 208 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 SH3KBP1Q96B97 665 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ANAPC7Q9UJX3 599 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 METTL21EPA6NDL7 271 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TRIM75PA6NK02 468 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF75DP51815 510 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 EHHADHQ08426 723 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 NGDNQ8NEJ9 315 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 DDX54Q8TDD1 881 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TRIM15Q9C019 465 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TMEM165Q9HC07 324 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TRIM36Q9NQ86 728 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 MAGED2Q9UNF1 606 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 FNDC3AQ9Y2H6 1198 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 SH3GLB1Q9Y371 365 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 GAS2O43903 313 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 RTN3O95197 1032 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 MCM5P33992 734 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 RGS6P49758 472 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 PTK2BQ14289 1009 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 KCTD2Q14681 263 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TSNQ15631 228 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ELF2Q15723 593 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 MCTP2Q6DN12 878 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF574Q6ZN55 896 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 CDKL3Q8IVW4 592 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 TMEM168Q9H0V1 697 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 EXOSC4Q9NPD3 245 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 GALNT8Q9NY28 637 aa8.24□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC163A0A0D9SF12 145 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 PIPSLA2A3N6 862 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 HMGB3O15347 200 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 PSME3P61289 254 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 POU5F1BQ06416 359 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 ATP1A4Q13733 1029 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 PUM3Q15397 648 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 CAPS2Q9BXY5 557 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 ZNF225Q9UK10 706 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 AP4S1Q9Y587 144 aa8.23□□□□□ -1.09
LIMCH1-201ENST00000313860 SPDYE5A6NIY4 337 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms