RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 NBPF10Q6P3W6 841 aaKnown RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 USP17L2Q6R6M4 530 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 NBPF15Q8N660 670 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 GPT2Q8TD30 523 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 SSH3Q8TE77 659 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 MRPL46Q9H2W6 279 aaKnown RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 HERC5Q9UII4 1024 aaKnown RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 SCOCQ9UIL1 159 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 PXDNQ92626 1479 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 SUN1O94901 812 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 BRD1O95696 1058 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 PHKA1P46020 1223 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 VPS41P49754 854 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 TFAP4Q01664 338 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 PPP2R5CQ13362 524 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 SLC10A5Q5PT55 438 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 FCHSD1Q86WN1 690 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 UHMK1Q8TAS1 419 aaKnown RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 OTUD7AQ8TE49 926 aaPredicted RBP8.95□□□□□ -0.98
VPS41-202ENST00000310301 OTUD5Q96G74 571 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 PLA2G12BQ9BX93 195 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 AMFRQ9UKV5 643 aa8.95□□□□□ -0.98
VPS41-202ENST00000310301 POLRMTO00411 1230 aaKnown RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 PDE6AP16499 860 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 MAN1A1P33908 653 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 GTF2A2P52657 109 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 APBA1Q02410 837 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 BIRC3Q13489 604 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 PPP4R1Q8TF05 950 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 LBHD1Q9BQE6 289 aaPredicted RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 NUCKS1Q9H1E3 243 aaKnown RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 GINM1Q9NU53 330 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 MYO1AQ9UBC5 1043 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 ZHX2Q9Y6X8 837 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 GIPC1O14908 333 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 DEXIO95424 95 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 ZNF827Q17R98 1081 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 DEFB115Q30KQ5 88 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 LCA5Q86VQ0 697 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 TDRD3Q9H7E2 651 aaKnown RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 SLC24A3Q9HC58 644 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 MYOZ2Q9NPC6 264 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 FAM207AQ9NSI2 230 aaPredicted RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 KCNG1Q9UIX4 513 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 PNPLA7Q6ZV29 1317 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 USP17L12C9JPN9 530 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 USP17L21D6R901 530 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 PSMD14O00487 310 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 ZBTB7BO15156 539 aaPredicted RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 NR1I2O75469 434 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 NTSR2O95665 410 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 ALAS1P13196 640 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 PHEXP78562 749 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 CASC4Q6P4E1 433 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 SRGAP1Q7Z6B7 1085 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 NRKQ7Z2Y5 1582 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 RGS12O14924 1447 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 FAM170AA1A519 330 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 BUB1O43683 1085 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 ZKSCAN8Q15776 578 aaPredicted RBP8.94□□□□□ -0.98
VPS41-202ENST00000310301 SLFN13Q68D06 897 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 PDZD8Q8NEN9 1154 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 BLZF1Q9H2G9 400 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 MEGF6O75095 1541 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 ADCY9O60503 1353 aa8.94□□□□□ -0.98
VPS41-202ENST00000310301 MANSC4A6NHS7 340 aaPredicted RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 CCNT1O60563 726 aaKnown RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 HDLBPQ00341 1268 aaKnown RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS41-202ENST00000310301 ICE2Q659A1 982 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 MLXIPQ9HAP2 919 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 RNF8O76064 485 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 STK10O94804 968 aaKnown RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 MYCLP12524 364 aaPredicted RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 GUCY2CP25092 1073 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 NXNQ6DKJ4 435 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 PALM2Q8IXS6 379 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 OR8K1Q8NGG5 319 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 MAIP1Q8WWC4 291 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 ATP2A3Q93084 1043 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 SPDL1Q96EA4 605 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 FNBP1Q96RU3 617 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 KRT12Q99456 494 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 TSC22D3Q99576 134 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 INHBEP58166 350 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 FAM133BQ5BKY9 247 aaKnown RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 ELMSAN1Q6PJG2 1045 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 TMEM179Q6ZVK1 233 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 CCDC89Q8N998 374 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 NRBP1Q9UHY1 535 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 NWD1Q149M9 1564 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 DNAJC8O75937 253 aaPredicted RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 IFNAR2P48551 515 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 TTC38Q5R3I4 469 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 GPATCH4Q5T3I0 446 aaKnown RBP8.93□□□□□ -0.98
VPS41-202ENST00000310301 MIGA2Q7L4E1 593 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 CTAGE3PQ8IX95 158 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 RETREG2Q8NC44 543 aa8.93□□□□□ -0.98
VPS41-202ENST00000310301 EXOC4Q96A65 974 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms