RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 KRT79Q5XKE5 535 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 CCDC174Q6PII3 467 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 CCDC25Q86WR0 208 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 EFCAB13Q8IY85 973 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 CNOT6LQ96LI5 555 aaKnown RBP13.99□□□□□ -0.17
RETREG3-201ENST00000309428 ZNF287Q9HBT7 754 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 LRRC4BQ9NT99 713 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 POLLQ9UGP5 575 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 BAZ2AQ9UIF9 1905 aaKnown RBP13.99□□□□□ -0.17
RETREG3-201ENST00000309428 NCK2O43639 380 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 CLNS1AP54105 237 aaKnown RBP13.99□□□□□ -0.17
RETREG3-201ENST00000309428 PRR16Q569H4 304 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 NEK8Q86SG6 692 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 PACS2Q86VP3 889 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 GSDMAQ96QA5 445 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 BPIFA3Q9BQP9 254 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 ABHD10Q9NUJ1 306 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 TCP10L2B9ZVM9 353 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 BUB1BO60566 1050 aaPredicted RBP13.99□□□□□ -0.17
RETREG3-201ENST00000309428 MDM2Q00987 491 aaPredicted RBP13.99□□□□□ -0.17
RETREG3-201ENST00000309428 RASSF7Q02833 373 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 TCP11X2Q5H9J9 407 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 EPB41L5Q9HCM4 733 aa13.99□□□□□ -0.17
RETREG3-201ENST00000309428 CEP104O60308 925 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 MLXIPQ9HAP2 919 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 WDR19Q8NEZ3 1342 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 FTCDO95954 541 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 BMP15O95972 392 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 EZRP15311 586 aaKnown RBP13.98□□□□□ -0.17
RETREG3-201ENST00000309428 GNA11P29992 359 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 GNAQP50148 359 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 PABPC4Q13310 644 aaKnown RBP eCLIP13.98□□□□□ -0.176e-14■■■□□ 18
RETREG3-201ENST00000309428 B4GALNT4Q76KP1 1039 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 SV2BQ7L1I2 683 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 PANX2Q96RD6 677 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 NUDT12Q9BQG2 462 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 KIAA1024Q9UPX6 916 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 NEBLO76041 1014 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 CFBP00751 764 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 ERCC5P28715 1186 aaPredicted RBP13.98□□□□□ -0.17
RETREG3-201ENST00000309428 ADCY7P51828 1080 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 EHHADHQ08426 723 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 LRRC31Q6UY01 552 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 MIGA2Q7L4E1 593 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 ANKZF1Q9H8Y5 726 aa13.98□□□□□ -0.17
RETREG3-201ENST00000309428 GOLGA6L10A0A0M3HER8 536 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 E9PMD0 336 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 NR1I3Q14994 352 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 MMS22LQ6ZRQ5 1243 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 ZFPM1Q8IX07 1006 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 KRT12Q99456 494 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 ADD3Q9UEY8 706 aaKnown RBP13.97□□□□□ -0.17
RETREG3-201ENST00000309428 MAD2L2Q9UI95 211 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 NFU1Q9UMS0 254 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 COL1A1P02452 1464 aaPredicted RBP13.97□□□□□ -0.17
RETREG3-201ENST00000309428 VIMP08670 466 aaKnown RBP13.97□□□□□ -0.17
RETREG3-201ENST00000309428 ERVK-24P63145 666 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 ANKRD40Q6AI12 368 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 PAIP2Q9BPZ3 127 aaKnown RBP13.97□□□□□ -0.17
RETREG3-201ENST00000309428 L1RE1Q9UN81 338 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 SLC37A4O43826 429 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 CPXCR1Q8N123 301 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 RBM17Q96I25 401 aaKnown RBP13.97□□□□□ -0.17
RETREG3-201ENST00000309428 DPH5Q9H2P9 285 aa13.97□□□□□ -0.17
RETREG3-201ENST00000309428 TMEM110-MUSTN1A8MSY1 372 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 CHRNA5P30532 468 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 TUBB4BP68371 445 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 GUCY1A3Q02108 690 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 FUT2Q10981 343 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 NNTQ13423 1086 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 MUM1L1Q5H9M0 696 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 GOLPH3Q9H4A6 298 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 SLC24A3Q9HC58 644 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 PACSIN2Q9UNF0 486 aaPredicted RBP13.96□□□□□ -0.17
RETREG3-201ENST00000309428 KRT14P02533 472 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 HLA-DOAP06340 250 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 NFRKBQ6P4R8 1299 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 TSG101Q99816 390 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 QTRT2Q9H974 415 aaKnown RBP13.96□□□□□ -0.17
RETREG3-201ENST00000309428 FLT1P17948 1338 aa13.96□□□□□ -0.17
RETREG3-201ENST00000309428 MYO1FO00160 1098 aa13.96□□□□□ -0.18
RETREG3-201ENST00000309428 APBA3O96018 575 aa13.96□□□□□ -0.18
RETREG3-201ENST00000309428 KRT13P13646 458 aa13.96□□□□□ -0.18
RETREG3-201ENST00000309428 KRT71Q3SY84 523 aa13.96□□□□□ -0.18
RETREG3-201ENST00000309428 ZNF658Q5TYW1 1059 aaPredicted RBP13.96□□□□□ -0.18
RETREG3-201ENST00000309428 MCTP2Q6DN12 878 aa13.96□□□□□ -0.18
RETREG3-201ENST00000309428 PCDHA1Q9Y5I3 950 aa13.96□□□□□ -0.18
RETREG3-201ENST00000309428 TUBGCP6Q96RT7 1819 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 NEFHP12036 1026 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 TUBB2AQ13885 445 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 EZH2Q15910 746 aaKnown RBP13.95□□□□□ -0.18
RETREG3-201ENST00000309428 FAM114A1Q8IWE2 563 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 KIRREL3Q8IZU9 778 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 TRIML1Q8N9V2 468 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 MGARPQ8TDB4 240 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 TUBB2BQ9BVA1 445 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 TDRD3Q9H7E2 651 aaKnown RBP13.95□□□□□ -0.18
RETREG3-201ENST00000309428 DCCP43146 1447 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 CLIC2O15247 247 aa13.95□□□□□ -0.18
RETREG3-201ENST00000309428 HEXIM1O94992 359 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms