RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GAP43P17677 238 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 LRRC41Q15345 812 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 ZNF713Q8N859 430 aaPredicted RBP13.97□□□□□ -0.17
COL3A1-201ENST00000304636 TRIM11Q96F44 468 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 NOP53Q9NZM5 478 aaKnown RBP13.97□□□□□ -0.17
COL3A1-201ENST00000304636 THEGQ9P2T0 379 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 STK36Q9NRP7 1315 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 ANKRD65E5RJM6 399 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 TADA3O75528 432 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 PPM1FP49593 454 aaPredicted RBP13.97□□□□□ -0.17
COL3A1-201ENST00000304636 BPIFB4P59827 614 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 COG7P83436 770 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 SGO2Q562F6 1265 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 TRIM42Q8IWZ5 723 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 TRPC6Q9Y210 931 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 PARP3Q9Y6F1 533 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 WDR19Q8NEZ3 1342 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 SART1O43290 800 aaKnown RBP13.97□□□□□ -0.17
COL3A1-201ENST00000304636 SKIP12755 728 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 DISC1Q9NRI5 854 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 ZWINTO95229 277 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 GCFC2P16383 781 aaKnown RBP13.97□□□□□ -0.17
COL3A1-201ENST00000304636 SERPINB6P35237 376 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 FAM102BQ5T8I3 360 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 REREQ9P2R6 1566 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 ANAPC5Q9UJX4 755 aa13.97□□□□□ -0.17
COL3A1-201ENST00000304636 FOSP01100 380 aaPredicted RBP13.96□□□□□ -0.17
COL3A1-201ENST00000304636 H0YCG3 227 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 SRGAP2O75044 1071 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 FAM186BQ8IYM0 893 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 DIS3Q9Y2L1 958 aaKnown RBP13.96□□□□□ -0.17
COL3A1-201ENST00000304636 MED14O60244 1454 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 RPAP1Q9BWH6 1393 aaPredicted RBP13.96□□□□□ -0.17
COL3A1-201ENST00000304636 SHROOM2Q13796 1616 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 MYCNP04198 464 aaPredicted RBP13.96□□□□□ -0.17
COL3A1-201ENST00000304636 KRT19P08727 400 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 P4HA1P13674 534 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 PLCG1P19174 1290 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 USP14P54578 494 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 ARHGAP4P98171 946 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 PPP2R5DQ14738 602 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 RNF34Q969K3 372 aa13.96□□□□□ -0.17
COL3A1-201ENST00000304636 INHBAP08476 426 aa13.96□□□□□ -0.18
COL3A1-201ENST00000304636 SLC12A2P55011 1212 aa13.96□□□□□ -0.18
COL3A1-201ENST00000304636 KRT81Q14533 505 aa13.96□□□□□ -0.18
COL3A1-201ENST00000304636 CHURC1Q8WUH1 139 aa13.96□□□□□ -0.18
COL3A1-201ENST00000304636 USP6P35125 1406 aa13.96□□□□□ -0.18
COL3A1-201ENST00000304636 PRPF6O94906 941 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 CDC25AP30304 524 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 SLCO1A2P46721 670 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 PTK2Q05397 1052 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 DBN1Q16643 649 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 DPP8Q6V1X1 898 aaPredicted RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 LRRC47Q8N1G4 583 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 DDX27Q96GQ7 796 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 PLA2R1Q13018 1463 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 CTIFO43310 598 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 TBCKQ8TEA7 893 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 AP1M1Q9BXS5 423 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 PFDN4Q9NQP4 134 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 KIF1BO60333 1816 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 UGGT1Q9NYU2 1555 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 TARSL2A2RTX5 802 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 CCZ1BP86790 482 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 CCZ1P86791 482 aaPredicted RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 TMED2Q15363 201 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 ASPRV1Q53RT3 343 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 TBC1D1Q86TI0 1168 aaPredicted RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 FBXO11Q86XK2 927 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 PDCD7Q8N8D1 485 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 TEKT3Q9BXF9 490 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 ZBED4O75132 1171 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 POLR2BP30876 1174 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 ZYXQ15942 572 aaKnown RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 ODR4Q5SWX8 454 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 ZNF653Q96CK0 615 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 GPHNQ9NQX3 736 aaPredicted RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 USP40Q9NVE5 1235 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 FAF1Q9UNN5 650 aaPredicted RBP13.95□□□□□ -0.18
COL3A1-201ENST00000304636 MAPK4P31152 587 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 KAZNQ674X7 775 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 LCORLQ8N3X6 602 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 NT5C1BQ96P26 610 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 EPC1Q9H2F5 836 aa13.95□□□□□ -0.18
COL3A1-201ENST00000304636 POLR2MP0CAP2 368 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 LIG4P49917 911 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 PDE1CQ14123 709 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-201ENST00000304636 MFSD14BQ5SR56 506 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 TMTC3Q6ZXV5 915 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 NLRX1Q86UT6 975 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 DEPTORQ8TB45 409 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 EMILIN3Q9NT22 766 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 GCNT4Q9P109 453 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 GFPT2O94808 682 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 CUL4BQ13620 913 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 PPP4R3CPQ6ZMV5 832 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 PAXIP1Q6ZW49 1069 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-201ENST00000304636 PPP2R5AQ15172 486 aa13.94□□□□□ -0.18
COL3A1-201ENST00000304636 TSGA10IPQ3SY00 556 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms